Literature DB >> 33570420

Stabilizing or Destabilizing: Simulations of Chymotrypsin Inhibitor 2 under Crowding Reveal Existence of a Crossover Temperature.

Stepan Timr1,2, Fabio Sterpone1,2.   

Abstract

The effect of macromolecular crowding on the stability of proteins can change with temperature. This dependence might reveal a delicate balance between two factors: the entropic excluded volume and the stability-modulating quinary interactions. Here we computationally investigate the thermal stability of the native state of chymotrypsin inhibitor 2 (CI2), which was previously shown by experiments to be destabilized by protein crowders at room temperature. Mimicking experimental conditions, our enhanced-sampling atomistic simulations of CI2 surrounded by lysozyme and bovine serum albumin reproduce this destabilization but also provide evidence of a crossover temperature above which lysozyme is found to become stabilizing, as previously predicted by analysis of thermodynamic data. We relate this crossover to the different CI2-crowder interactions and the local packing experienced by CI2. In fact, we clearly show that the pronounced stabilization induced by lysozyme at high temperatures stems from the tight local packing created around CI2 by this smaller crowder.

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Year:  2021        PMID: 33570420     DOI: 10.1021/acs.jpclett.0c03626

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  4 in total

Review 1.  Protein assembly and crowding simulations.

Authors:  Lim Heo; Yuji Sugita; Michael Feig
Journal:  Curr Opin Struct Biol       Date:  2022-02-23       Impact factor: 6.809

2.  Crowding-induced protein destabilization in the absence of soft attractions.

Authors:  Saman Bazmi; Stefan Wallin
Journal:  Biophys J       Date:  2022-06-07       Impact factor: 3.699

Review 3.  On the Effects of Disordered Tails, Supertertiary Structure and Quinary Interactions on the Folding and Function of Protein Domains.

Authors:  Francesca Malagrinò; Valeria Pennacchietti; Daniele Santorelli; Livia Pagano; Caterina Nardella; Awa Diop; Angelo Toto; Stefano Gianni
Journal:  Biomolecules       Date:  2022-01-26

4.  Computational Insights into the Unfolding of a Destabilized Superoxide Dismutase 1 Mutant.

Authors:  Stepan Timr; Fabio Sterpone
Journal:  Biology (Basel)       Date:  2021-11-27
  4 in total

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