Literature DB >> 33570407

The Genesis of Molecular Volcano Plots.

Matthew D Wodrich1, Boodsarin Sawatlon1, Michael Busch1,2,3, Clemence Corminboeuf1,2.   

Abstract

ConspectusFor the past two decades, linear free energy scaling relationships and volcano plots have seen frequent use as computational tools that aid in understanding and predicting the catalytic behavior of heterogeneous and electrocatalysts. Based on Sabatier's principle, which states that a catalyst should bind a substrate neither too strongly nor too weakly, volcano plots provide an estimate of catalytic performance (e.g., overpotential, catalytic cycle thermodynamics/kinetics, etc.) through knowledge of a descriptor variable. By the use of linear free energy scaling relationships, the value of this descriptor is employed to estimate the relative energies of other catalytic cycle intermediates/transition states. Postprocessing of these relationships leads to a volcano curve that reveals the anticipated performance of each catalyst, with the best species appearing on or near the peak or plateau. While the origin of volcanoes is undoubtedly rooted in examining heterogeneously catalyzed reactions, only recently has this concept been transferred to the realm of homogeneous catalysis. This Account summarizes the work done by our group in implementing and refining "molecular volcano plots" for use in analyzing and predicting the behavior of homogeneous catalysts.We begin by taking the reader through the initial proof-of-principle study that transferred the model from heterogeneous to homogeneous catalysis by examining thermodynamic aspects of a Suzuki-Miyaura cross-coupling reaction. By establishing linear free energy scaling relationships and reproducing the volcano shape, we definitively showed that volcano plots are also valid for homogeneous systems. On the basis of this key finding, we further illustrate how unified pictures of C-C cross-coupling thermodynamics were created using three-dimensional molecular volcanoes.The second section highlights an important transformation from "thermodynamic" to "kinetic" volcanoes by using the descriptor variable to directly estimate transition state barriers. Taking this idea further, we demonstrate how volcanoes can be used to directly predict an experimental observable, the turnover frequency. Discussion is also provided on how different flavors of molecular volcanoes can be used to analyze aspects of homogeneous catalysis of interest to experimentalists, such as determining the product selectivity and probing the substrate scope.The third section focuses on incorporating machine learning approaches into molecular volcanoes and invoking big-data-type approaches in the analysis of catalytic behavior. Specifically, we illustrate how machine learning can be used to predict the value of the descriptor variable, which facilitates nearly instantaneous screening of thousands of catalysts. With the large amount of data created from the machine learning/volcano plot tandem, we show how the resulting database can be mined to garner an enhanced understanding of catalytic processes. Emphasis is also placed on the latest generation of augmented volcano plots, which differ fundamentally from earlier volcanoes by elimination of the use of linear free energy scaling relationships and by assessment of the similarity of the complete catalytic cycle energy profile to that for an ideal reference species that is used to discriminate catalytic performance.We conclude by examining a handful of applications of molecular volcano plots to interesting problems in homogeneous catalysis and offering thoughts on the future prospects and uses of this new set of tools.

Entities:  

Year:  2021        PMID: 33570407     DOI: 10.1021/acs.accounts.0c00857

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  7 in total

Review 1.  Constructing and interpreting volcano plots and activity maps to navigate homogeneous catalyst landscapes.

Authors:  Rubén Laplaza; Shubhajit Das; Matthew D Wodrich; Clémence Corminboeuf
Journal:  Nat Protoc       Date:  2022-08-17       Impact factor: 17.021

2.  New Strategies for Direct Methane-to-Methanol Conversion from Active Learning Exploration of 16 Million Catalysts.

Authors:  Aditya Nandy; Chenru Duan; Conrad Goffinet; Heather J Kulik
Journal:  JACS Au       Date:  2022-04-27

3.  Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis.

Authors:  Miguel Steiner; Markus Reiher
Journal:  Top Catal       Date:  2022-01-13       Impact factor: 2.910

4.  Uncovering the Activity of Alkaline Earth Metal Hydrogenation Catalysis Through Molecular Volcano Plots.

Authors:  Shubhajit Das; Bart De Tobel; Mercedes Alonso; Clémence Corminboeuf
Journal:  Top Catal       Date:  2021-08-25       Impact factor: 2.910

5.  Manpixiao Decoction Halted the Malignant Transformation of Precancerous Lesions of Gastric Cancer: From Network Prediction to In-Vivo Verification.

Authors:  Yuan Li; Tao Li; Jiena Chen; Haocheng Zheng; Yicong Li; Fuhao Chu; Sici Wang; Ping Li; Jie Lin; Zeqi Su; Xia Ding
Journal:  Front Pharmacol       Date:  2022-08-05       Impact factor: 5.988

6.  Mapping Active Site Geometry to Activity in Immobilized Frustrated Lewis Pair Catalysts.

Authors:  Shubhajit Das; Ruben Laplaza; J Terence Blaskovits; Clémence Corminboeuf
Journal:  Angew Chem Int Ed Engl       Date:  2022-05-05       Impact factor: 16.823

7.  Mapping Catalyst-Solvent Interplay in Competing Carboamination/Cyclopropanation Reactions.

Authors:  Matthew D Wodrich; Miyeon Chang; Simone Gallarati; Łukasz Woźniak; Nicolai Cramer; Clemence Corminboeuf
Journal:  Chemistry       Date:  2022-06-10       Impact factor: 5.020

  7 in total

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