Literature DB >> 33568738

Pooled testing with replication as a mass testing strategy for the COVID-19 pandemics.

Julius Žilinskas1, Algirdas Lančinskas2, Mario R Guarracino3,4.   

Abstract

During the COVID-19 pandemic it is essential to test as many people as possible, in order to detect early outbreaks of the infection. Present testing solutions are based on the extraction of RNA from patients using oropharyngeal and nasopharyngeal swabs, and then testing with real-time PCR for the presence of specific RNA filaments identifying the virus. This approach is limited by the availability of reactants, trained technicians and laboratories. One of the ways to speed up the testing procedures is a group testing, where the swabs of multiple patients are grouped together and tested. In this paper we propose to use the group testing technique in conjunction with an advanced replication scheme in which each patient is allocated in two or more groups to reduce the total numbers of tests and to allow testing of even larger numbers of people. Under mild assumptions, a 13 ×  average reduction of tests can be achieved compared to individual testing without delay in time.

Entities:  

Year:  2021        PMID: 33568738      PMCID: PMC7876015          DOI: 10.1038/s41598-021-83104-4

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  7 in total

1.  Beta-Binomial Model for the Detection of Rare Mutations in Pooled Next-Generation Sequencing Experiments.

Authors:  Audrone Jakaitiene; Mariano Avino; Mario Rosario Guarracino
Journal:  J Comput Biol       Date:  2016-09-15       Impact factor: 1.479

2.  Evaluation of COVID-19 RT-qPCR Test in Multi sample Pools.

Authors:  Idan Yelin; Noga Aharony; Einat Shaer Tamar; Amir Argoetti; Esther Messer; Dina Berenbaum; Einat Shafran; Areen Kuzli; Nagham Gandali; Omer Shkedi; Tamar Hashimshony; Yael Mandel-Gutfreund; Michael Halberthal; Yuval Geffen; Moran Szwarcwort-Cohen; Roy Kishony
Journal:  Clin Infect Dis       Date:  2020-11-19       Impact factor: 9.079

3.  Informative group testing for multiplex assays.

Authors:  Christopher R Bilder; Joshua M Tebbs; Christopher S McMahan
Journal:  Biometrics       Date:  2019-03-28       Impact factor: 2.571

4.  Application of multi-objective optimization to pooled experiments of next generation sequencing for detection of rare mutations.

Authors:  Julius Zilinskas; Algirdas Lančinskas; Mario Rosario Guarracino
Journal:  PLoS One       Date:  2014-09-02       Impact factor: 3.240

5.  A web-oriented software for the optimization of pooled experiments in NGS for detection of rare mutations.

Authors:  Daniela Evangelista; Antonio Zuccaro; Algirdas Lančinskas; Julius Žilinskas; Mario R Guarracino
Journal:  BMC Res Notes       Date:  2016-02-17

6.  Efficient high-throughput SARS-CoV-2 testing to detect asymptomatic carriers.

Authors:  Noam Shental; Shlomia Levy; Vered Wuvshet; Shosh Skorniakov; Bar Shalem; Aner Ottolenghi; Yariv Greenshpan; Rachel Steinberg; Avishay Edri; Roni Gillis; Michal Goldhirsh; Khen Moscovici; Sinai Sachren; Lilach M Friedman; Lior Nesher; Yonat Shemer-Avni; Angel Porgador; Tomer Hertz
Journal:  Sci Adv       Date:  2020-09-11       Impact factor: 14.136

7.  Optimization of group size in pool testing strategy for SARS-CoV-2: A simple mathematical model.

Authors:  Diego Aragón-Caqueo; Javier Fernández-Salinas; David Laroze
Journal:  J Med Virol       Date:  2020-05-03       Impact factor: 20.693

  7 in total
  3 in total

1.  Discourse on COVID-19 Mass Testing vs. Rapid Testing Processing.

Authors:  Ali Cheshmehzangi; Tong Zou
Journal:  Front Public Health       Date:  2022-05-10

Review 2.  Mass Testing and Proactiveness Affect Epidemic Spreading.

Authors:  Saptarshi Sinha; Deep Nath; Soumen Roy
Journal:  J Indian Inst Sci       Date:  2021-08-06

3.  COVID-19 Outbreak in a Military Unit in Korea.

Authors:  Chanhee Kim; Young-Man Kim; Namwoo Heo; Eunjung Park; Sojin Choi; Nayoung Kim; Donghyok Kown; Young-Joon Park; Byeongseop Choi; Beomman Ha; Gyeonghwa Jeong; Changbo Park; Sejin Park; Heeyoung Lee
Journal:  Epidemiol Health       Date:  2021-09-08
  3 in total

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