Literature DB >> 33568695

Jumping over baselines with new methods to predict activation maps from resting-state fMRI.

Gabriele Lohmann1,2, Georg Martius3, Eric Lacosse4,5, Klaus Scheffler1,2.   

Abstract

Cognitive fMRI research primarily relies on task-averaged responses over many subjects to describe general principles of brain function. Nonetheless, there exists a large variability between subjects that is also reflected in spontaneous brain activity as measured by resting state fMRI (rsfMRI). Leveraging this fact, several recent studies have therefore aimed at predicting task activation from rsfMRI using various machine learning methods within a growing literature on 'connectome fingerprinting'. In reviewing these results, we found lack of an evaluation against robust baselines that reliably supports a novelty of predictions for this task. On closer examination to reported methods, we found most underperform against trivial baseline model performances based on massive group averaging when whole-cortex prediction is considered. Here we present a modification to published methods that remedies this problem to large extent. Our proposed modification is based on a single-vertex approach that replaces commonly used brain parcellations. We further provide a summary of this model evaluation by characterizing empirical properties of where prediction for this task appears possible, explaining why some predictions largely fail for certain targets. Finally, with these empirical observations we investigate whether individual prediction scores explain individual behavioral differences in a task.

Entities:  

Year:  2021        PMID: 33568695      PMCID: PMC7875973          DOI: 10.1038/s41598-021-82681-8

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  47 in total

1.  Default-mode activity during a passive sensory task: uncoupled from deactivation but impacting activation.

Authors:  Michael D Greicius; Vinod Menon
Journal:  J Cogn Neurosci       Date:  2004-11       Impact factor: 3.225

2.  Functional coactivation map of the human brain.

Authors:  Roberto Toro; Peter T Fox; Tomás Paus
Journal:  Cereb Cortex       Date:  2008-02-21       Impact factor: 5.357

3.  Correspondence of the brain's functional architecture during activation and rest.

Authors:  Stephen M Smith; Peter T Fox; Karla L Miller; David C Glahn; P Mickle Fox; Clare E Mackay; Nicola Filippini; Kate E Watkins; Roberto Toro; Angela R Laird; Christian F Beckmann
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-20       Impact factor: 11.205

4.  A group model for stable multi-subject ICA on fMRI datasets.

Authors:  G Varoquaux; S Sadaghiani; P Pinel; A Kleinschmidt; J B Poline; B Thirion
Journal:  Neuroimage       Date:  2010-02-12       Impact factor: 6.556

5.  Predicting an individual's dorsal attention network activity from functional connectivity fingerprints.

Authors:  David E Osher; James A Brissenden; David C Somers
Journal:  J Neurophysiol       Date:  2019-05-08       Impact factor: 2.714

6.  Function in the human connectome: task-fMRI and individual differences in behavior.

Authors:  Deanna M Barch; Gregory C Burgess; Michael P Harms; Steven E Petersen; Bradley L Schlaggar; Maurizio Corbetta; Matthew F Glasser; Sandra Curtiss; Sachin Dixit; Cindy Feldt; Dan Nolan; Edward Bryant; Tucker Hartley; Owen Footer; James M Bjork; Russ Poldrack; Steve Smith; Heidi Johansen-Berg; Abraham Z Snyder; David C Van Essen
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

7.  Anatomical connectivity patterns predict face selectivity in the fusiform gyrus.

Authors:  Zeynep M Saygin; David E Osher; Kami Koldewyn; Gretchen Reynolds; John D E Gabrieli; Rebecca R Saxe
Journal:  Nat Neurosci       Date:  2011-12-25       Impact factor: 24.884

8.  A computational model of shared fine-scale structure in the human connectome.

Authors:  J Swaroop Guntupalli; Ma Feilong; James V Haxby
Journal:  PLoS Comput Biol       Date:  2018-04-17       Impact factor: 4.475

9.  High-accuracy individual identification using a "thin slice" of the functional connectome.

Authors:  Lisa Byrge; Daniel P Kennedy
Journal:  Netw Neurosci       Date:  2019-02-01

10.  Task-Related Edge Density (TED)-A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain.

Authors:  Gabriele Lohmann; Johannes Stelzer; Verena Zuber; Tilo Buschmann; Daniel Margulies; Andreas Bartels; Klaus Scheffler
Journal:  PLoS One       Date:  2016-06-24       Impact factor: 3.240

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