Literature DB >> 33564874

Measurement of Telomere Length for Longitudinal Analysis: Implications of Assay Precision.

Daniel Nettle, Shahinaz M Gadalla, Tsung-Po Lai, Ezra Susser, Melissa Bateson, Abraham Aviv.   

Abstract

Researchers increasingly wish to test hypotheses concerning the impact of environmental or disease exposures on telomere length (TL), and they use longitudinal study designs to do so. In population studies, TL is usually measured with a quantitative polymerase chain reaction (qPCR)-based method. This method has been validated by calculating its correlation with a gold standard method such as Southern blotting (SB) in cross-sectional data sets. However, in a cross-section, the range of true variation in TL is large, and measurement error is introduced only once. In a longitudinal study, the target variation of interest is small, and measurement error is introduced at both baseline and follow-up. In this paper, we present results from a small data set (n = 20) in which leukocyte TL was measured twice 6.6 years apart by means of both qPCR and SB. The cross-sectional correlations between qPCR and SB were high at both baseline (r = 0.90) and follow-up (r = 0.85), yet their correlation for TL change was poor (r = 0.48). Moreover, the qPCR data but not the SB data showed strong signatures of measurement error. Through simulation, we show that the statistical power gain from performing a longitudinal analysis is much greater for SB than for qPCR. We discuss implications for optimal study design and analysis. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health 2021. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Keywords:  Southern blot; assay precision; leukocyte telomere length; longitudinal studies; measurement error; quantitative polymerase chain reaction; telomere length; terminal restriction fragment

Year:  2021        PMID: 33564874     DOI: 10.1093/aje/kwab025

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  8 in total

1.  Longitudinal telomere length profile does not reflect HIV and childhood trauma impacts on cognitive function in South African women.

Authors:  Jacqueline Samantha Womersley; Georgina Spies; Gerard Tromp; Soraya Seedat; Sian Megan Joanna Hemmings
Journal:  J Neurovirol       Date:  2021-08-26       Impact factor: 3.739

2.  DunedinPACE, a DNA methylation biomarker of the pace of aging.

Authors:  Daniel W Belsky; Avshalom Caspi; David L Corcoran; Karen Sugden; Richie Poulton; Louise Arseneault; Andrea Baccarelli; Kartik Chamarti; Xu Gao; Eilis Hannon; Hona Lee Harrington; Renate Houts; Meeraj Kothari; Dayoon Kwon; Jonathan Mill; Joel Schwartz; Pantel Vokonas; Cuicui Wang; Benjamin S Williams; Terrie E Moffitt
Journal:  Elife       Date:  2022-01-14       Impact factor: 8.713

3.  Impact of Amplification Efficiency Approaches on Telomere Length Measurement via Quantitative-Polymerase Chain Reaction.

Authors:  Waylon J Hastings; Dan T A Eisenberg; Idan Shalev
Journal:  Front Genet       Date:  2021-09-17       Impact factor: 4.599

4.  The telomere tumult: meaning and metrics in population studies.

Authors:  Abraham Aviv
Journal:  Lancet Healthy Longev       Date:  2022-05-04

5.  Telomere length predicts timing and intensity of migratory behaviour in a nomadic songbird.

Authors:  Ben J Vernasco; Heather E Watts
Journal:  Biol Lett       Date:  2022-08-03       Impact factor: 3.812

Review 6.  The bullwhip effect, T-cell telomeres, and SARS-CoV-2.

Authors:  Abraham Aviv
Journal:  Lancet Healthy Longev       Date:  2022-10

7.  Decoupling blood telomere length from age in recipients of allogeneic hematopoietic cell transplant in the BMT-CTN 1202.

Authors:  Tsung-Po Lai; Simon Verhulst; Casey L Dagnall; Amy Hutchinson; Stephen R Spellman; Alan Howard; Hormuzd A Katki; John E Levine; Wael Saber; Abraham Aviv; Shahinaz M Gadalla
Journal:  Front Immunol       Date:  2022-10-03       Impact factor: 8.786

8.  Short Telomeres and a T-Cell Shortfall in COVID-19: The Aging Effect.

Authors:  James J Anderson; Ezra Susser; Konstantin G Arbeev; Anatoliy I Yashin; Daniel Levy; Simon Verhulst; Abraham Aviv
Journal:  medRxiv       Date:  2021-07-10
  8 in total

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