Literature DB >> 33563988

Complete and cooperative in vitro assembly of computationally designed self-assembling protein nanomaterials.

Adam J Wargacki1,2, Tobias P Wörner3, Michiel van de Waterbeemd3, Daniel Ellis1,2,4, Albert J R Heck3, Neil P King5,6.   

Abstract

Recent advances in computational methods have enabled the predictive design of self-assembling protein nanomaterials with atomic-level accuracy. These design strategies focus exclusively on a single target structure, without consideration of the mechanism or dynamics of assembly. However, understanding the assembly process, and in particular its robustness to perturbation, will be critical for translating this class of materials into useful technologies. Here we investigate the assembly of two computationally designed, 120-subunit icosahedral complexes in detail using several complementary biochemical methods. We found that assembly of each material from its two constituent protein building blocks was highly cooperative and yielded exclusively complete, 120-subunit complexes except in one non-stoichiometric regime for one of the materials. Our results suggest that in vitro assembly provides a robust and controllable route for the manufacture of designed protein nanomaterials and confirm that cooperative assembly can be an intrinsic, rather than evolved, feature of hierarchically structured protein complexes.

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Year:  2021        PMID: 33563988      PMCID: PMC7873210          DOI: 10.1038/s41467-021-21251-y

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  61 in total

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Journal:  Virology       Date:  2003-10-25       Impact factor: 3.616

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Journal:  Nat Chem Biol       Date:  2008-08       Impact factor: 15.040

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Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

5.  Multiple origins of viral capsid proteins from cellular ancestors.

Authors:  Mart Krupovic; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

6.  Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.

Authors:  Yuxi Liu; Shane Gonen; Tamir Gonen; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

7.  Interrogating viral capsid assembly with ion mobility-mass spectrometry.

Authors:  Charlotte Uetrecht; Ioana M Barbu; Glen K Shoemaker; Esther van Duijn; Albert J R Heck
Journal:  Nat Chem       Date:  2010-12-19       Impact factor: 24.427

8.  On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP.

Authors:  António Roldão; Maria Candida M Mellado; J C Lima; Manuel J T Carrondo; Paula M Alves; R Oliveira
Journal:  PLoS Comput Biol       Date:  2012-02-16       Impact factor: 4.475

Review 9.  Geometric Defects and Icosahedral Viruses.

Authors:  Joseph Che-Yen Wang; Suchetana Mukhopadhyay; Adam Zlotnick
Journal:  Viruses       Date:  2018-01-04       Impact factor: 5.048

10.  Kinetic constraints on self-assembly into closed supramolecular structures.

Authors:  Thomas C T Michaels; Mathias M J Bellaiche; Michael F Hagan; Tuomas P J Knowles
Journal:  Sci Rep       Date:  2017-09-25       Impact factor: 4.379

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  4 in total

Review 1.  High-Resolution Native Mass Spectrometry.

Authors:  Sem Tamara; Maurits A den Boer; Albert J R Heck
Journal:  Chem Rev       Date:  2021-08-20       Impact factor: 72.087

Review 2.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

Review 3.  Supramolecular assembly of protein building blocks: from folding to function.

Authors:  Nam Hyeong Kim; Hojae Choi; Zafar Muhammad Shahzad; Heesoo Ki; Jaekyoung Lee; Heeyeop Chae; Yong Ho Kim
Journal:  Nano Converg       Date:  2022-01-13

Review 4.  Virus-like particles against infectious disease and cancer: guidance for the nano-architect.

Authors:  Rory A Hills; Mark Howarth
Journal:  Curr Opin Biotechnol       Date:  2021-10-29       Impact factor: 9.740

  4 in total

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