Literature DB >> 33563980

Forecasting influenza activity using machine-learned mobility map.

Srinivasan Venkatramanan1, Adam Sadilek2, Arindam Fadikar3, Christopher L Barrett1,4, Matthew Biggerstaff5, Jiangzhuo Chen1, Xerxes Dotiwalla6, Paul Eastham6, Bryant Gipson6, Dave Higdon7, Onur Kucuktunc6, Allison Lieber6, Bryan L Lewis1, Zane Reynolds8, Anil K Vullikanti1,4, Lijing Wang1,4, Madhav Marathe1,4.   

Abstract

Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus on a machine-learned anonymized mobility map (hereon referred to as AMM) aggregated over hundreds of millions of smartphones and evaluate its utility in forecasting epidemics. We factor AMM into a metapopulation model to retrospectively forecast influenza in the USA and Australia. We show that the AMM model performs on-par with those based on commuter surveys, which are sparsely available and expensive. We also compare it with gravity and radiation based models of mobility, and find that the radiation model's performance is quite similar to AMM and commuter flows. Additionally, we demonstrate our model's ability to predict disease spread even across state boundaries. Our work contributes towards developing timely infectious disease forecasting at a global scale using human mobility datasets expanding their applications in the area of infectious disease epidemiology.

Entities:  

Year:  2021        PMID: 33563980      PMCID: PMC7873234          DOI: 10.1038/s41467-021-21018-5

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  31 in total

1.  Limits of predictability in human mobility.

Authors:  Chaoming Song; Zehui Qu; Nicholas Blumm; Albert-László Barabási
Journal:  Science       Date:  2010-02-19       Impact factor: 47.728

2.  The role of subway travel in an influenza epidemic: a New York City simulation.

Authors:  Philip Cooley; Shawn Brown; James Cajka; Bernadette Chasteen; Laxminarayana Ganapathi; John Grefenstette; Craig R Hollingsworth; Bruce Y Lee; Burton Levine; William D Wheaton; Diane K Wagener
Journal:  J Urban Health       Date:  2011-10       Impact factor: 3.671

3.  Using data-driven agent-based models for forecasting emerging infectious diseases.

Authors:  Srinivasan Venkatramanan; Bryan Lewis; Jiangzhuo Chen; Dave Higdon; Anil Vullikanti; Madhav Marathe
Journal:  Epidemics       Date:  2017-02-22       Impact factor: 4.396

4.  Understanding individual human mobility patterns.

Authors:  Marta C González; César A Hidalgo; Albert-László Barabási
Journal:  Nature       Date:  2008-06-05       Impact factor: 49.962

5.  Forecasting the spatial transmission of influenza in the United States.

Authors:  Sen Pei; Sasikiran Kandula; Wan Yang; Jeffrey Shaman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

6.  Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models.

Authors:  Marco Ajelli; Bruno Gonçalves; Duygu Balcan; Vittoria Colizza; Hao Hu; José J Ramasco; Stefano Merler; Alessandro Vespignani
Journal:  BMC Infect Dis       Date:  2010-06-29       Impact factor: 3.090

7.  Human mobility and the spatial transmission of influenza in the United States.

Authors:  Vivek Charu; Scott Zeger; Julia Gog; Ottar N Bjørnstad; Stephen Kissler; Lone Simonsen; Bryan T Grenfell; Cécile Viboud
Journal:  PLoS Comput Biol       Date:  2017-02-10       Impact factor: 4.475

8.  Collaborative efforts to forecast seasonal influenza in the United States, 2015-2016.

Authors:  Craig J McGowan; Matthew Biggerstaff; Michael Johansson; Karyn M Apfeldorf; Michal Ben-Nun; Logan Brooks; Matteo Convertino; Madhav Erraguntla; David C Farrow; John Freeze; Saurav Ghosh; Sangwon Hyun; Sasikiran Kandula; Joceline Lega; Yang Liu; Nicholas Michaud; Haruka Morita; Jarad Niemi; Naren Ramakrishnan; Evan L Ray; Nicholas G Reich; Pete Riley; Jeffrey Shaman; Ryan Tibshirani; Alessandro Vespignani; Qian Zhang; Carrie Reed
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

9.  Hierarchical organization of urban mobility and its connection with city livability.

Authors:  Aleix Bassolas; Hugo Barbosa-Filho; Brian Dickinson; Xerxes Dotiwalla; Paul Eastham; Riccardo Gallotti; Gourab Ghoshal; Bryant Gipson; Surendra A Hazarie; Henry Kautz; Onur Kucuktunc; Allison Lieber; Adam Sadilek; José J Ramasco
Journal:  Nat Commun       Date:  2019-10-23       Impact factor: 14.919

10.  Results from the centers for disease control and prevention's predict the 2013-2014 Influenza Season Challenge.

Authors:  Matthew Biggerstaff; David Alper; Mark Dredze; Spencer Fox; Isaac Chun-Hai Fung; Kyle S Hickmann; Bryan Lewis; Roni Rosenfeld; Jeffrey Shaman; Ming-Hsiang Tsou; Paola Velardi; Alessandro Vespignani; Lyn Finelli
Journal:  BMC Infect Dis       Date:  2016-07-22       Impact factor: 3.090

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  1 in total

1.  Network Models and Simulation Analytics for Multi-scale Dynamics of Biological Invasions.

Authors:  Abhijin Adiga; Nicholas Palmer; Young Yun Baek; Henning Mortveit; S S Ravi
Journal:  Front Big Data       Date:  2022-02-07
  1 in total

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