Literature DB >> 33563978

Evidence for SARS-CoV-2 related coronaviruses circulating in bats and pangolins in Southeast Asia.

Supaporn Wacharapluesadee1, Chee Wah Tan2, Patarapol Maneeorn3, Prateep Duengkae4, Feng Zhu2, Yutthana Joyjinda1, Thongchai Kaewpom1, Wan Ni Chia2, Weenassarin Ampoot1, Beng Lee Lim2, Kanthita Worachotsueptrakun1, Vivian Chih-Wei Chen2, Nutthinee Sirichan4, Chanida Ruchisrisarod1, Apaporn Rodpan1, Kirana Noradechanon3, Thanawadee Phaichana3, Niran Jantarat3, Boonchu Thongnumchaima3, Changchun Tu5,6, Gary Crameri7, Martha M Stokes8, Thiravat Hemachudha9, Lin-Fa Wang10,11.   

Abstract

Among the many questions unanswered for the COVID-19 pandemic are the origin of SARS-CoV-2 and the potential role of intermediate animal host(s) in the early animal-to-human transmission. The discovery of RaTG13 bat coronavirus in China suggested a high probability of a bat origin. Here we report molecular and serological evidence of SARS-CoV-2 related coronaviruses (SC2r-CoVs) actively circulating in bats in Southeast Asia. Whole genome sequences were obtained from five independent bats (Rhinolophus acuminatus) in a Thai cave yielding a single isolate (named RacCS203) which is most related to the RmYN02 isolate found in Rhinolophus malayanus in Yunnan, China. SARS-CoV-2 neutralizing antibodies were also detected in bats of the same colony and in a pangolin at a wildlife checkpoint in Southern Thailand. Antisera raised against the receptor binding domain (RBD) of RmYN02 was able to cross-neutralize SARS-CoV-2 despite the fact that the RBD of RacCS203 or RmYN02 failed to bind ACE2. Although the origin of the virus remains unresolved, our study extended the geographic distribution of genetically diverse SC2r-CoVs from Japan and China to Thailand over a 4800-km range. Cross-border surveillance is urgently needed to find the immediate progenitor virus of SARS-CoV-2.

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Year:  2021        PMID: 33563978      PMCID: PMC7873279          DOI: 10.1038/s41467-021-21240-1

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  111 in total

1.  'Major stones unturned': COVID origin search must continue after WHO report, say scientists.

Authors:  Smriti Mallapaty; Amy Maxmen; Ewen Callaway
Journal:  Nature       Date:  2021-02       Impact factor: 49.962

Review 2.  Cellular host factors for SARS-CoV-2 infection.

Authors:  Jim Baggen; Els Vanstreels; Sander Jansen; Dirk Daelemans
Journal:  Nat Microbiol       Date:  2021-09-01       Impact factor: 17.745

3.  AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models.

Authors:  Milton Silva; Diogo Pratas; Armando J Pinho
Journal:  Entropy (Basel)       Date:  2021-04-26       Impact factor: 2.524

Review 4.  Systematic review on role of structure based drug design (SBDD) in the identification of anti-viral leads against SARS-Cov-2.

Authors:  Nilesh Gajanan Bajad; Swetha Rayala; Gopichand Gutti; Anjali Sharma; Meenakshi Singh; Ashok Kumar; Sushil Kumar Singh
Journal:  Curr Res Pharmacol Drug Discov       Date:  2021-05-14

5.  Molecular basis of cross-species ACE2 interactions with SARS-CoV-2-like viruses of pangolin origin.

Authors:  Sheng Niu; Jia Wang; Bin Bai; Lili Wu; Anqi Zheng; Qian Chen; Pei Du; Pengcheng Han; Yanfang Zhang; Yunfei Jia; Chengpeng Qiao; Jianxun Qi; Wen-Xia Tian; Hong-Wei Wang; Qihui Wang; George Fu Gao
Journal:  EMBO J       Date:  2021-06-08       Impact factor: 14.012

Review 6.  Microorganisms as Shapers of Human Civilization, from Pandemics to Even Our Genomes: Villains or Friends? A Historical Approach.

Authors:  Francisco Rodríguez-Frías; Josep Quer; David Tabernero; Maria Francesca Cortese; Selene Garcia-Garcia; Ariadna Rando-Segura; Tomas Pumarola
Journal:  Microorganisms       Date:  2021-12-06

Review 7.  Natural and Experimental SARS-CoV-2 Infection in Domestic and Wild Animals.

Authors:  David A Meekins; Natasha N Gaudreault; Juergen A Richt
Journal:  Viruses       Date:  2021-10-04       Impact factor: 5.048

8.  Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses.

Authors:  Hong Zhou; Jingkai Ji; Xing Chen; Yuhai Bi; Juan Li; Qihui Wang; Tao Hu; Hao Song; Runchu Zhao; Yanhua Chen; Mingxue Cui; Yanyan Zhang; Alice C Hughes; Edward C Holmes; Weifeng Shi
Journal:  Cell       Date:  2021-06-09       Impact factor: 66.850

9.  Science, not speculation, is essential to determine how SARS-CoV-2 reached humans.

Authors:  Charles H Calisher; Dennis Carroll; Rita Colwell; Ronald B Corley; Peter Daszak; Christian Drosten; Luis Enjuanes; Jeremy Farrar; Hume Field; Josie Golding; Alexander E Gorbalenya; Bart Haagmans; James M Hughes; Gerald T Keusch; Sai Kit Lam; Juan Lubroth; John S Mackenzie; Larry Madoff; Jonna Keener Mazet; Stanley M Perlman; Leo Poon; Linda Saif; Kanta Subbarao; Michael Turner
Journal:  Lancet       Date:  2021-07-05       Impact factor: 79.321

Review 10.  Fundamental and Advanced Therapies, Vaccine Development against SARS-CoV-2.

Authors:  Nikola Hudakova; Simona Hricikova; Amod Kulkarni; Mangesh Bhide; Eva Kontsekova; Dasa Cizkova
Journal:  Pathogens       Date:  2021-05-21
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