Literature DB >> 33562149

Riboswitch theo/metE as a Transcription Regulation Tool for Xanthomonas citri subsp. citri.

Danilo Bueno1, Danielle B Pedrolli2, Paula M M Martins3, Daniela A Bocchini4, Karen C M Moraes1, Agda P Facincani5, Jesus A Ferro5, Alessandro M Varani5, Michelle M Pena5, Henrique Ferreira1.   

Abstract

: Xanthomonas citri subsp. citri (X. citri) is the causal agent of Asiatic Citrus Canker (ACC), a disease that affects citrus. ACC has no cure, and growers must rely on special agricultural practices to prevent bacterial spreading. Understanding X. citri basic biology is essential to foresee potential genetic targets to control ACC. Traditionally, microbial genetics use gene deletion/disruption to investigate gene function. However, essential genes are difficult to study this way. Techniques based on small-RNAs and antisense-RNAs are powerful for gene characterization, but not yet fully explored in prokaryotes. One alternative is riboswitches, which derive from bacteria, and can control transcription/translation. Riboswitches are non-coding RNAs able to modulate gene expression in the presence of specific ligands. Here we demonstrate that the riboswitch theo/metE decreases parB expression in X. citri in a platform responsive to theophylline. By monitoring cell respiration, we showed that higher concentrations of the ligand interfered with bacterial viability. Therefore, we determined the safe dose of theophylline to be used with X. citri. Finally, in downstream investigations of parB transcription modulation, we show evidence for the fact that ParB is stable, remains functional throughout the cell cycle, and is inherited by the daughter cells upon cell division.

Entities:  

Keywords:  chromosome segregation; citrus canker; pNPTS138 sequence; parB; regulation of gene expression

Year:  2021        PMID: 33562149      PMCID: PMC7914508          DOI: 10.3390/microorganisms9020329

Source DB:  PubMed          Journal:  Microorganisms        ISSN: 2076-2607


  39 in total

1.  Emended classification of xanthomonad pathogens on citrus.

Authors:  Norman W Schaad; Elena Postnikova; George Lacy; Aaron Sechler; Irina Agarkova; Paul E Stromberg; Verlyn K Stromberg; Anne K Vidaver
Journal:  Syst Appl Microbiol       Date:  2006-12       Impact factor: 4.022

2.  Distribution of centromere-like parS sites in bacteria: insights from comparative genomics.

Authors:  Jonathan Livny; Yoshiharu Yamaichi; Matthew K Waldor
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

3.  The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

Authors:  Stephen A Bustin; Vladimir Benes; Jeremy A Garson; Jan Hellemans; Jim Huggett; Mikael Kubista; Reinhold Mueller; Tania Nolan; Michael W Pfaffl; Gregory L Shipley; Jo Vandesompele; Carl T Wittwer
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

4.  Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Authors:  Wade Winkler; Ali Nahvi; Ronald R Breaker
Journal:  Nature       Date:  2002-10-16       Impact factor: 49.962

5.  Modularity of select riboswitch expression platforms enables facile engineering of novel genetic regulatory devices.

Authors:  Pablo Ceres; Andrew D Garst; Joan G Marcano-Velázquez; Robert T Batey
Journal:  ACS Synth Biol       Date:  2013-03-28       Impact factor: 5.110

Review 6.  CRISPR Tools To Control Gene Expression in Bacteria.

Authors:  Antoine Vigouroux; David Bikard
Journal:  Microbiol Mol Biol Rev       Date:  2020-04-01       Impact factor: 11.056

7.  Characterization of the Chromosome Dimer Resolution Site in Caulobacter crescentus.

Authors:  Ali Farrokhi; Hua Liu; George Szatmari
Journal:  J Bacteriol       Date:  2019-11-20       Impact factor: 3.490

8.  Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter.

Authors:  Justine Collier; Lucy Shapiro
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

9.  Riboswitch diversity and distribution.

Authors:  Phillip J McCown; Keith A Corbino; Shira Stav; Madeline E Sherlock; Ronald R Breaker
Journal:  RNA       Date:  2017-04-10       Impact factor: 4.942

10.  Polar Effects of Transposon Insertion into a Minimal Bacterial Genome.

Authors:  Clyde A Hutchison; Chuck Merryman; Lijie Sun; Nacyra Assad-Garcia; R Alexander Richter; Hamilton O Smith; John I Glass
Journal:  J Bacteriol       Date:  2019-09-06       Impact factor: 3.490

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  2 in total

1.  Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes.

Authors:  Anna Ender; Nadine Grafl; Tim Kolberg; Sven Findeiß; Peter F Stadler; Mario Mörl
Journal:  RNA       Date:  2022-01-12       Impact factor: 4.942

2.  XAC4296 Is a Multifunctional and Exclusive Xanthomonadaceae Gene Containing a Fusion of Lytic Transglycosylase and Epimerase Domains.

Authors:  Amanda C P de Oliveira; Rafael M Ferreira; Maria Inês T Ferro; Jesus A Ferro; Caio Zamuner; Henrique Ferreira; Alessandro M Varani
Journal:  Microorganisms       Date:  2022-05-11
  2 in total

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