| Literature DB >> 33558550 |
Babu Valliyodan1,2, Anne V Brown3, Juexin Wang4, Gunvant Patil1,5, Yang Liu6, Paul I Otyama7, Rex T Nelson3, Tri Vuong1, Qijian Song8, Theresa A Musket1, Ruth Wagner9, Pradeep Marri10,11, Sam Reddy10, Allen Sessions12, Xiaolei Wu12, David Grant3,7, Philipp E Bayer13, Manish Roorkiwal14, Rajeev K Varshney14, Xin Liu15,16, David Edwards13, Dong Xu4,6, Trupti Joshi4,6,17, Steven B Cannon3, Henry T Nguyen18.
Abstract
We report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.Entities:
Year: 2021 PMID： 33558550 DOI： 10.1038/s41597-021-00834-w
Source DB: PubMed Journal: Sci Data ISSN： 2052-4463 Impact factor: 6.444