Literature DB >> 33558539

The singularity response reveals entrainment properties of the plant circadian clock.

Kosaku Masuda1,2, Isao T Tokuda3, Norihito Nakamichi4, Hirokazu Fukuda5.   

Abstract

Circadian clocks allow organisms to synchronize their physiological processes to diurnal variations. A phase response curve allows researchers to understand clock entrainment by revealing how signals adjust clock genes differently according to the phase in which they are applied. Comprehensively investigating these curves is difficult, however, because of the cost of measuring them experimentally. Here we demonstrate that fundamental properties of the curve are recoverable from the singularity response, which is easily measured by applying a single stimulus to a cellular network in a desynchronized state (i.e. singularity). We show that the singularity response of Arabidopsis to light/dark and temperature stimuli depends on the properties of the phase response curve for these stimuli. The measured singularity responses not only allow the curves to be precisely reconstructed but also reveal organ-specific properties of the plant circadian clock. The method is not only simple and accurate, but also general and applicable to other coupled oscillator systems as long as the oscillators can be desynchronized. This simplified method may allow the entrainment properties of the circadian clock of both plants and other species in nature.

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Year:  2021        PMID: 33558539      PMCID: PMC7870946          DOI: 10.1038/s41467-021-21167-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  22 in total

1.  Tissue-specific clocks in Arabidopsis show asymmetric coupling.

Authors:  Motomu Endo; Hanako Shimizu; Maria A Nohales; Takashi Araki; Steve A Kay
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

Review 2.  Entrainment of circadian programs.

Authors:  Carl Hirschie Johnson; Jeffrey A Elliott; Russell Foster
Journal:  Chronobiol Int       Date:  2003-09       Impact factor: 2.877

3.  An extended mathematical model for reproducing the phase response of Arabidopsis thaliana under various light conditions.

Authors:  Takayuki Ohara; Hirokazu Fukuda; Isao T Tokuda
Journal:  J Theor Biol       Date:  2015-07-29       Impact factor: 2.691

4.  Phase response of the Arabidopsis thaliana circadian clock to light pulses of different wavelengths.

Authors:  Takayuki Ohara; Hirokazu Fukuda; Isao T Tokuda
Journal:  J Biol Rhythms       Date:  2015-04       Impact factor: 3.182

5.  PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock.

Authors:  Patrice A Salomé; C Robertson McClung
Journal:  Plant Cell       Date:  2005-02-10       Impact factor: 11.277

Review 6.  Circadian control of global gene expression patterns.

Authors:  Colleen J Doherty; Steve A Kay
Journal:  Annu Rev Genet       Date:  2010       Impact factor: 16.830

7.  Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity.

Authors:  Todd P Michael; Patrice A Salome; C Robertson McClung
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-07       Impact factor: 11.205

8.  Controlling circadian rhythms by dark-pulse perturbations in Arabidopsis thaliana.

Authors:  Hirokazu Fukuda; Haruhiko Murase; Isao T Tokuda
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

9.  Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks.

Authors:  Simon Bordage; Stuart Sullivan; Janet Laird; Andrew J Millar; Hugh G Nimmo
Journal:  New Phytol       Date:  2016-05-31       Impact factor: 10.151

10.  Multicellularity enriches the entrainment of Arabidopsis circadian clock.

Authors:  Kosaku Masuda; Ryota Kitaoka; Kazuya Ukai; Isao T Tokuda; Hirokazu Fukuda
Journal:  Sci Adv       Date:  2017-10-04       Impact factor: 14.136

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  3 in total

1.  Time Lag Between Light and Heat Diurnal Cycles Modulates CIRCADIAN CLOCK ASSOCIATION 1 Rhythm and Growth in Arabidopsis thaliana.

Authors:  Kosaku Masuda; Tatsuya Yamada; Yuya Kagawa; Hirokazu Fukuda
Journal:  Front Plant Sci       Date:  2021-02-11       Impact factor: 5.753

Review 2.  Principles, mechanisms and functions of entrainment in biological oscillators.

Authors:  Alba Jiménez; Ying Lu; Ashwini Jambhekar; Galit Lahav
Journal:  Interface Focus       Date:  2022-04-15       Impact factor: 4.661

3.  Circadian entrainment in Arabidopsis.

Authors:  Shouming Wang; Gareth Steed; Alex A R Webb
Journal:  Plant Physiol       Date:  2022-09-28       Impact factor: 8.005

  3 in total

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