Literature DB >> 33557811

Lack of redundancy between electrophysiological measures of long-range neuronal communication.

Daniel Strahnen1, Sampath K T Kapanaiah2, Alexei M Bygrave3, Dennis Kätzel4.   

Abstract

BACKGROUND: Communication between brain areas has been implicated in a wide range of cognitive and emotive functions and is impaired in numerous mental disorders. In rodent models, various metrics have been used to quantify inter-regional neuronal communication. However, in individual studies, typically, only very few measures of coupling are reported and, hence, redundancy across such indicators is implicitly assumed.
RESULTS: In order to test this assumption, we here comparatively assessed a broad range of directional and non-directional metrics like coherence, Weighted Phase Lag Index (wPLI), phase-locking value (PLV), pairwise phase consistency (PPC), parametric and non-parametric Granger causality (GC), partial directed coherence (PDC), directed transfer function (DTF), spike-phase coupling (SPC), cross-regional phase-amplitude coupling, amplitude cross-correlations and others. We applied these analyses to simultaneous field recordings from the prefrontal cortex and the ventral and dorsal hippocampus in the schizophrenia-related Gria1-knockout mouse model which displays a robust novelty-induced hyperconnectivity phenotype. Using the detectability of coupling deficits in Gria1-/- mice and bivariate correlations within animals as criteria, we found that across such measures, there is a considerable lack of functional redundancy. Except for three pairwise correlations-PLV with PPC, PDC with DTF and parametric with non-parametric Granger causality-almost none of the analysed metrics consistently co-varied with any of the other measures across the three connections and two genotypes analysed. Notable exceptions to this were the correlation of coherence with PPC and PLV that was found in most cases, and partial correspondence between these three measures and Granger causality. Perhaps most surprisingly, partial directed coherence and Granger causality-sometimes regarded as equivalent measures of directed influence-diverged profoundly. Also, amplitude cross-correlation, spike-phase coupling and theta-gamma phase-amplitude coupling each yielded distinct results compared to all other metrics.
CONCLUSIONS: Our analysis highlights the difficulty of quantifying real correlates of inter-regional information transfer, underscores the need to assess multiple coupling measures and provides some guidelines which metrics to choose for a comprehensive, yet non-redundant characterization of functional connectivity.

Entities:  

Keywords:  Amplitude cross-correlation; Granger causality; Gria1; Hippocampal-prefrontal coherence; Pairwise phase-consistency; Partial directed coherence; Phase-amplitude coupling; Phase-locking value; Spike-phase coupling; wPLI

Year:  2021        PMID: 33557811      PMCID: PMC7871592          DOI: 10.1186/s12915-021-00950-4

Source DB:  PubMed          Journal:  BMC Biol        ISSN: 1741-7007            Impact factor:   7.431


  70 in total

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3.  Behaviour of Granger causality under filtering: theoretical invariance and practical application.

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4.  Hippocampal-prefrontal theta phase synchrony in planning of multi-step actions based on memory retrieval.

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5.  Low- and high-gamma oscillations deviate in opposite directions from zero-phase synchrony in the limbic corticostriatal loop.

Authors:  Julien Catanese; J Eric Carmichael; Matthijs A A van der Meer
Journal:  J Neurophysiol       Date:  2016-03-09       Impact factor: 2.714

6.  Importance of AMPA receptors for hippocampal synaptic plasticity but not for spatial learning.

Authors:  D Zamanillo; R Sprengel; O Hvalby; V Jensen; N Burnashev; A Rozov; K M Kaiser; H J Köster; T Borchardt; P Worley; J Lübke; M Frotscher; P H Kelly; B Sommer; P Andersen; P H Seeburg; B Sakmann
Journal:  Science       Date:  1999-06-11       Impact factor: 47.728

7.  Chronux: a platform for analyzing neural signals.

Authors:  Hemant Bokil; Peter Andrews; Jayant E Kulkarni; Samar Mehta; Partha P Mitra
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8.  Hippocampal-prefrontal input supports spatial encoding in working memory.

Authors:  Timothy Spellman; Mattia Rigotti; Susanne E Ahmari; Stefano Fusi; Joseph A Gogos; Joshua A Gordon
Journal:  Nature       Date:  2015-06-08       Impact factor: 49.962

9.  Inferring the direction of rhythmic neural transmission via inter-regional phase-amplitude coupling (ir-PAC).

Authors:  Bijurika Nandi; Peter Swiatek; Bernat Kocsis; Mingzhou Ding
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Review 10.  What causes aberrant salience in schizophrenia? A role for impaired short-term habituation and the GRIA1 (GluA1) AMPA receptor subunit.

Authors:  C Barkus; D J Sanderson; J N P Rawlins; M E Walton; P J Harrison; D M Bannerman
Journal:  Mol Psychiatry       Date:  2014-09-16       Impact factor: 15.992

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  1 in total

1.  A low-cost open-source 5-choice operant box system optimized for electrophysiology and optophysiology in mice.

Authors:  Thomas Akam; Dennis Kätzel; Sampath K T Kapanaiah; Bastiaan van der Veen; Daniel Strahnen
Journal:  Sci Rep       Date:  2021-11-15       Impact factor: 4.379

  1 in total

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