Literature DB >> 33556124

Modernising fish and shark growth curves with Bayesian length-at-age models.

Jonathan J Smart1,2, Gretchen L Grammer1,2.   

Abstract

Growth modelling is a fundamental component of fisheries assessments but is often hindered by poor quality data from biased sampling. Several methods have attempted to account for sample bias in growth analyses. However, in many cases this bias is not overcome, especially when large individuals are under-sampled. In growth models, two key parameters have a direct biological interpretation: L0, which should correspond to length-at-birth and L∞, which should approximate the average length of full-grown individuals. Here, we present an approach of fitting Bayesian growth models using Markov Chain Monte Carlo (MCMC), with informative priors on these parameters to improve the biological plausibility of growth estimates. A generalised framework is provided in an R package 'BayesGrowth', which removes the hurdle of programming an MCMC model for new users. Four case studies representing different sampling scenarios as well as three simulations with different selectivity functions were used to compare this Bayesian framework to standard frequentist growth models. The Bayesian models either outperformed or matched the results of frequentist growth models in all examples, demonstrating the broad benefits offered by this approach. This study highlights the impact that Bayesian models could provide in age and growth studies if applied more routinely rather than being limited to only complex or sophisticated applications.

Entities:  

Mesh:

Year:  2021        PMID: 33556124      PMCID: PMC7870076          DOI: 10.1371/journal.pone.0246734

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  7 in total

1.  Age and growth of three endemic threatened guitarfishes Pseudobatos horkelii, P. percellens and Zapteryx brevirostris in the western South Atlantic Ocean.

Authors:  Fabio P Caltabellotta; Zachary A Siders; Debra J Murie; Fabio S Motta; Gregor M Cailliet; Otto B F Gadig
Journal:  J Fish Biol       Date:  2019-09-04       Impact factor: 2.051

2.  Life-history variation along environmental and harvest clines of a northern freshwater fish: Plasticity and adaptation.

Authors:  Kyle L Wilson; Joe De Gisi; Christopher L Cahill; Oliver E Barker; John R Post
Journal:  J Anim Ecol       Date:  2019-03-14       Impact factor: 5.091

3.  Biphasic growth in fish II: empirical assessment.

Authors:  Christopher Quince; Brian J Shuter; Peter A Abrams; Nigel P Lester
Journal:  J Theor Biol       Date:  2008-07-07       Impact factor: 2.691

4.  Growth potential can affect timing of maturity in a long-lived semelparous fish.

Authors:  Kazuki Yokouchi; Françoise Daverat; Michael J Miller; Nobuto Fukuda; Ryusuke Sudo; Katsumi Tsukamoto; Pierre Elie; W Russell Poole
Journal:  Biol Lett       Date:  2018-07       Impact factor: 3.703

Review 5.  Bayesian demography 250 years after Bayes.

Authors:  Jakub Bijak; John Bryant
Journal:  Popul Stud (Camb)       Date:  2016-02-23

6.  Determining individual variation in growth and its implication for life-history and population processes using the empirical Bayes method.

Authors:  Simone Vincenzi; Marc Mangel; Alain J Crivelli; Stephan Munch; Hans J Skaug
Journal:  PLoS Comput Biol       Date:  2014-09-11       Impact factor: 4.475

7.  Individual back-calculated size-at-age based on otoliths from Pacific coral reef fish species.

Authors:  Fabien Morat; Jérémy Wicquart; Nina M D Schiettekatte; Guillemette de Sinéty; Jean Bienvenu; Jordan M Casey; Simon J Brandl; Jason Vii; Jérémy Carlot; Samuel Degregori; Alexandre Mercière; Pauline Fey; René Galzin; Yves Letourneur; Pierre Sasal; Valeriano Parravicini
Journal:  Sci Data       Date:  2020-10-27       Impact factor: 6.444

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.