Literature DB >> 33555594

Techniques for Characterizing Cytomegalovirus-Encoded miRNAs.

Nicole L Diggins1, Lindsey B Crawford1, Hillary M Struthers1, Lauren M Hook1, Igor Landais1, Rebecca L Skalsky1, Meaghan H Hancock2.   

Abstract

microRNAs (miRNAs) are small noncoding RNAs that regulate gene expression at the posttranscriptional level by binding to sites within the 3' untranslated regions of messenger RNA (mRNA) transcripts. The discovery of this completely new mechanism of gene regulation necessitated the development of a variety of techniques to further characterize miRNAs, their expression, and function. In this chapter, we will discuss techniques currently used in the miRNA field to detect, express and inhibit miRNAs, as well as methods used to identify and validate their targets, specifically with respect to the miRNAs encoded by human cytomegalovirus.

Entities:  

Keywords:  Human cytomegalovirus (HCMV); Locked nucleic acids (LNA); Luciferase assay; Northern Blot; Photoactivatable ribonucleoside-enhanced cross-linking and Immunoprecipitation (PAR CLIP); RISC-immunoprecipitation (RISC-IP); Stem-loop real-time PCR; microRNA (miRNA)

Mesh:

Substances:

Year:  2021        PMID: 33555594     DOI: 10.1007/978-1-0716-1111-1_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  52 in total

1.  Rhesus cytomegalovirus encodes seventeen microRNAs that are differentially expressed in vitro and in vivo.

Authors:  Meaghan H Hancock; Rebecca S Tirabassi; Jay A Nelson
Journal:  Virology       Date:  2012-02-02       Impact factor: 3.616

2.  Identification and characterization of human cytomegalovirus-encoded microRNAs.

Authors:  Finn Grey; Andy Antoniewicz; Edwards Allen; Julie Saugstad; Andy McShea; James C Carrington; Jay Nelson
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

3.  High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection.

Authors:  Thomas J Stark; Justin D Arnold; Deborah H Spector; Gene W Yeo
Journal:  J Virol       Date:  2011-10-19       Impact factor: 5.103

Review 4.  Metazoan MicroRNAs.

Authors:  David P Bartel
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

5.  Cytomegalovirus microRNA expression is tissue specific and is associated with persistence.

Authors:  Christine Meyer; Finn Grey; Craig N Kreklywich; Takeshi F Andoh; Rebecca S Tirabassi; Susan L Orloff; Daniel N Streblow
Journal:  J Virol       Date:  2010-10-27       Impact factor: 5.103

6.  Identification of microRNAs of the herpesvirus family.

Authors:  Sébastien Pfeffer; Alain Sewer; Mariana Lagos-Quintana; Robert Sheridan; Chris Sander; Friedrich A Grässer; Linda F van Dyk; C Kiong Ho; Stewart Shuman; Minchen Chien; James J Russo; Jingyue Ju; Glenn Randall; Brett D Lindenbach; Charles M Rice; Viviana Simon; David D Ho; Mihaela Zavolan; Thomas Tuschl
Journal:  Nat Methods       Date:  2005-02-16       Impact factor: 28.547

7.  Human cytomegalovirus latent infection alters the expression of cellular and viral microRNA.

Authors:  Miao Fu; Yan Gao; Qiuju Zhou; Qi Zhang; Ying Peng; Kegang Tian; Jinhua Wang; Xiaoqun Zheng
Journal:  Gene       Date:  2013-12-18       Impact factor: 3.688

8.  Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus.

Authors:  Amy H Buck; Javier Santoyo-Lopez; Kevin A Robertson; Diwakar S Kumar; Martin Reczko; Peter Ghazal
Journal:  J Virol       Date:  2007-10-10       Impact factor: 5.103

9.  Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation.

Authors:  Lars Dölken; Jonathan Perot; Valérie Cognat; Abdelmalek Alioua; Matthias John; Jürgen Soutschek; Zsolt Ruzsics; Ulrich Koszinowski; Olivier Voinnet; Sébastien Pfeffer
Journal:  J Virol       Date:  2007-10-17       Impact factor: 5.103

Review 10.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

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