| Literature DB >> 33553778 |
P C Sumayya1, Godsa Merin Babu1, K Muraleedharan1.
Abstract
Avenanthramides (AVs) are polyphenolic components found in oats. The present work is devoted to the exploration of structure-based radical scavenging activity of nine AVs; 2p, 2f, 2c, 1p, 1c, 1f, 1s, 2s, and 3f, using M06-2X functional level of density functional theory with basis set 6-31+G(d, p) both in gas and ethanol medium. The act of compounds towards the electron transfer mechanism was analyzed with the help of a Donor-acceptor map (DAM) and classified as antioxidants and anti-reductants. The main mechanism of radical action, HAT, SET-PT, and SPLET were examined and found to be the preference of HAT and SPLET respectively in the gas phase and ethanol medium. The computed quantum mechanical atom in molecule (QTAIM) parameters; the intramolecular H-bonding, Noncovalent interactions, aromaticity also acted as pillars to supports the activity of compounds. The activity was found to be increasing with the stabilizing group ortho to the reactive phenolic OH group.Entities:
Keywords: Avenanthramides; Density functional theory; Donor acceptor map; Oats phenolics; Spin density
Year: 2021 PMID: 33553778 PMCID: PMC7859309 DOI: 10.1016/j.heliyon.2021.e06125
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Figure 1Chemical structures of the oats avenanthramides (p = p-coumaric acid, f = ferulic acid, c = caffeic acid and s = sinapic acid).
Figure 2A & B are color-filled RDG map showing non-covalent interactions of 2p and 2c respectively. The hydrogen bonds are displayed in blue, van der Waals is presented in light green and steric repulsions are shown in red. C & D are the plots of the reduced density gradient versus the electron density multiplied by the sign of the second hessian eigenvalue, sign (λ2)ρ of 2p and 2c respectively.
Figure 4Spin density contour diagrams of 2p showing distribution of electron density when a radical is formed in respective positions.
BCP parameters of intermolecular hydrogen bonds: electron density, Laplacian of the electron density, and hydrogen bond strength (kcal/mol) (calculated from M062X/6-31+G(d,p) wave function in the gas phase) for Avenanthramides.
| BCP parameters | ||||||
|---|---|---|---|---|---|---|
| ρ(r) | g(r) | v(r) | g(r)+v(r) | Δ2ρ(r) | EHB (kcal/mol) | |
| NH----CO | ||||||
| 0.03290 | 0.02840 | -0.02830 | 0.00002 | 0.11353 | -8.87926 | |
| 0.03310 | 0.02850 | -0.02840 | 0.00001 | 0.11394 | -8.91064 | |
| 0.03289 | 0.02829 | -0.02827 | 0.00002 | 0.11328 | -8.86985 | |
| 0.03363 | 0.02890 | -0.02888 | 0.00002 | 0.11564 | -9.06124 | |
| 0.03378 | 0.02903 | -0.02901 | 0.00002 | 0.11618 | -9.10203 | |
| 0.03388 | 0.02911 | -0.02909 | 0.00002 | 0.11653 | -9.12399 | |
| 0.03361 | 0.02887 | -0.02885 | 0.00002 | 0.11556 | -9.05183 | |
| 0.03267 | 0.02811 | -0.02809 | 0.00002 | 0.11257 | -8.81337 | |
| 0.0335 | 0.02744 | -0.02876 | -0.00132 | 0.11492 | -9.03614 | |
| OH⋯ OCH3 | ||||||
| 0.01976 | 0.02014 | -0.01838 | 0.00176 | 0.08760 | -5.76681 | |
| 0.01973 | 0.02013 | -0.01836 | 0.00177 | 0.08759 | -5.76054 | |
| 0.02014 | 0.02047 | -0.01876 | 0.00171 | 0.08873 | -5.89859 | |
| 0.01311 | 0.01123 | -0.01010 | 0.00113 | 0.04941 | -3.16892 | |
| 0.02011 | 0.02045 | -0.01873 | 0.00172 | 0.08865 | -5.87977 | |
| 0.01289 | 0.01105 | -0.00914 | 0.00191 | 0.04873 | -2.86772 | |
| 0.01932 | 0.01985 | -0.01798 | 0.00187 | 0.08689 | -5.64131 | |
| 0.01975 | 0.02014 | -0.01837 | 0.00177 | 0.08762 | -5.76368 | |
Figure 3DAM plots of AVs A) model, B) in the gas phase, and C) in ethanol.
SD values for the O-radical and delocalization index of C–O bond computed for AVs using M062X/6-31G+(d,p) level of theory in the gas phase.
| AVs | Parameter | Bond | ||||
|---|---|---|---|---|---|---|
| N˙ | COO˙ | 5-O˙ | 4′-O˙ | 3′-O˙ | ||
| SD | 0.120 | 0.153 | 0.087 | 0.115 | - | |
| DI | 1.532 | 1.898 | 1.859 | 1.676 | - | |
| SD | 0.121 | 0.153 | 0.086 | 0.068 | - | |
| DI | 1.532 | 1.899 | 1.859 | 1.913 | - | |
| SD | 0.120 | 0.153 | 0.087 | 0.071 | 0.084 | |
| DI | 1.532 | 1.896 | 1.859 | 1.872 | 1.872 | |
| SD | 0.131 | 0.153 | - | 0.076 | - | |
| DI | 1.494 | 1.892 | - | 1.899 | - | |
| SD | 0.107 | 0.153 | - | 0.071 | 0.084 | |
| DI | 1.512 | 1.891 | - | 1.872 | 1.872 | |
| SD | 0.138 | 0.153 | - | 0.068 | - | |
| DI | 1.496 | 1.894 | - | 1.914 | - | |
| SD | 0.139 | 0.153 | - | - | ||
| DI | 1.496 | 1.892 | - | 1.880 | - | |
| SD | 0.120 | 0.152 | 0.087 | 0.075 | - | |
| DI | 1.534 | 1.894 | 1.859 | 1.879 | - | |
| SD | 0.103 | 0.152 | 0.085 | 0.068 | - | |
| DI | 1.550 | 1.881 | 1.866 | 1.913 | - | |