Literature DB >> 33553626

Complete chloroplast genome sequence of Chrysosplenium ramosum and Chrysosplenium alternifolium (Saxifragaceae).

Wen-Jie Yan1, Hong Liu2, Tian-Ge Yang2, Rui Liao2, Rui Qin2.   

Abstract

The complete chloroplast genome of Chrysosplenium ramosum Maxim. and Chrysosplenium alternifolium L. were reported in this study. The chloroplast genomes were 153,460 bp for C. ramosum and 152,619 bp for C. alternifolium. LSC and SSC of 83,670 bp and 17,342 bp were separated by two IRs of 26,224 bp each in C. ramosum. While C. alternifolium contained IRs of 25,992 bp, LSC of 83,524 bp and SSC of 17,111 bp. The chloroplast genome of C. ramosum contains 112 unique genes, including 79 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. And the chloroplast genome of C. alternifolium contains 112 unique genes, including 79 protein-coding genes, four ribosomal RNA genes, and 30 transfer RNA genes. In addition, the rps12 gene was recognized as a trans-spliced gene and 17 intron-containing genes were also detected.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chrysosplenium; chloroplast genome; phylogeny

Year:  2020        PMID: 33553626      PMCID: PMC7850371          DOI: 10.1080/23802359.2020.1790313

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

1.  Phylogenetic relationships and evolution in Chrysosplenium (Saxifragaceae) based on matK sequence data.

Authors:  D E Soltis; M Tago-Nakazawa; Q Y Xiang; S Kawano; J Murata; M Wakabayashi; C Hibsch-Jetter
Journal:  Am J Bot       Date:  2001-05       Impact factor: 3.844

2.  Informed and automated k-mer size selection for genome assembly.

Authors:  Rayan Chikhi; Paul Medvedev
Journal:  Bioinformatics       Date:  2013-06-03       Impact factor: 6.937

3.  ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.

Authors:  Shaun D Jackman; Benjamin P Vandervalk; Hamid Mohamadi; Justin Chu; Sarah Yeo; S Austin Hammond; Golnaz Jahesh; Hamza Khan; Lauren Coombe; Rene L Warren; Inanc Birol
Journal:  Genome Res       Date:  2017-02-23       Impact factor: 9.043

4.  Complete chloroplast genome sequence of Chrysosplenium sinicum and Chrysosplenium lanuginosum (Saxifragaceae).

Authors:  Rui Liao; Xiang Dong; Zhi-Hua Wu; Rui Qin; Hong Liu
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-10       Impact factor: 0.658

  4 in total

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