Literature DB >> 33552143

Research on Components Assembly Platform of Biological Sequences Alignment Algorithm.

Haihe Shi1, Gang Wu1, Xuchu Zhang1, Jun Wang1, Haipeng Shi2,3, Shenghua Xu2.   

Abstract

After years of development, the complexity of the biological sequence alignment algorithm is gradually increasing, and the lack of high abstract level domain research leads to the complexity of its algorithm development and improvement. By applying the idea of software components to the design and development of algorithms, the development efficiency and reliability of biological sequence alignment algorithms can be effectively improved. The component assembly platform applies related assembly technology, which simplifies the operation difficulty of component assembly and facilitates the maintenance and optimization of the algorithm. At the same time, a friendly visual interface is used to intuitively complete the assembly of algorithm components, and an executable sequence alignment algorithm program is obtained, which can directly carry out alignment computing.
Copyright © 2021 Shi, Wu, Zhang, Wang, Shi and Xu.

Entities:  

Keywords:  B/S architecture; biological sequence alignment algorithm; component; component assembly platform; component model

Year:  2021        PMID: 33552143      PMCID: PMC7859483          DOI: 10.3389/fgene.2020.630923

Source DB:  PubMed          Journal:  Front Genet        ISSN: 1664-8021            Impact factor:   4.599


  7 in total

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Journal:  J Comput Biol       Date:  1994       Impact factor: 1.479

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Journal:  Bioinformatics       Date:  1998-06       Impact factor: 6.937

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Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

4.  SpliVert: A Protein Multiple Sequence Alignment Refinement Method Based on Splitting-Splicing Vertically.

Authors:  Qing Zhan; Yilei Fu; Qinghua Jiang; Bo Liu; Jiajie Peng; Yadong Wang
Journal:  Protein Pept Lett       Date:  2020       Impact factor: 1.890

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Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data.

Authors:  Guohua Wang; Yunlong Liu; Dongxiao Zhu; Gunnar W Klau; Weixing Feng
Journal:  Biomed Res Int       Date:  2015-09-07       Impact factor: 3.411

7.  ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.

Authors:  Qing Zhan; Nan Wang; Shuilin Jin; Renjie Tan; Qinghua Jiang; Yadong Wang
Journal:  BMC Bioinformatics       Date:  2019-11-25       Impact factor: 3.169

  7 in total
  2 in total

1.  Exploration of the Effect on Genome-Wide DNA Methylation by miR-143 Knock-Out in Mice Liver.

Authors:  Xingping Chen; Junyi Luo; Jie Liu; Ting Chen; Jiajie Sun; Yongliang Zhang; Qianyun Xi
Journal:  Int J Mol Sci       Date:  2021-12-03       Impact factor: 6.208

2.  Bioinformatic Characterization of Whole Blood Neutrophils in Pelvic Inflammatory Disease: A Potential Prognostic Indicator for Transumbilical Single-Port Laparoscopic Pelvic Abscess Surgery.

Authors:  Haining Li; Yanling Hu; Dan Liu; Juanjuan Wang; Panpan Han; Nan Zhang; Yan Li
Journal:  Comput Math Methods Med       Date:  2022-04-01       Impact factor: 2.238

  2 in total

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