Literature DB >> 33552114

Molecular Phylogenetics and Micromorphology of Australasian Stipeae (Poaceae, Subfamily Pooideae), and the Interrelation of Whole-Genome Duplication and Evolutionary Radiations in This Grass Tribe.

Natalia Tkach1, Marcin Nobis2, Julia Schneider1, Hannes Becher1,3, Grit Winterfeld1, Surrey W L Jacobs4, Martin Röser1.   

Abstract

The mainly Australian grass genus Austrostipa (tribe Stipeae) comprising approximately 64 species represents a remarkable example of an evolutionary radiation. To investigate aspects of diversification, macro- and micromorphological variation in this genus, we conducted molecular phylogenetic and scanning electron microscopy (SEM) analyses including representatives from most of Austrostipa's currently accepted subgenera. Because of its taxonomic significance in Stipeae, we studied the lemma epidermal pattern (LEP) in 34 representatives of Austrostipa. Plastid DNA variation within Austrostipa was low and only few lineages were resolved. Nuclear ITS and Acc1 yielded comparable groupings of taxa and resolved subgenera Arbuscula, Petaurista, and Bambusina in a common clade and as monophyletic. In most of the Austrostipa species studied, the LEP was relatively uniform (typical maize-like), but six species had a modified cellular structure. The species representing subgenera Lobatae, Petaurista, Bambusina as well as A. muelleri from subg. Tuberculatae were well-separated from all the other species included in the analysis. We suggest recognizing nine subgenera in Austrostipa (with number of species): Arbuscula (4), Aulax (2), Austrostipa (36), Bambusina (2), Falcatae (10), Lobatae (5), Longiaristatae (2), Petaurista (2) and the new subgenus Paucispiculatae (1) encompassing A. muelleri. Two paralogous sequence copies of Acc1, forming two distinct clades, were found in polyploid Austrostipa and Anemanthele. We found analogous patterns for our samples of Stipa s.str. with their Acc1 clades strongly separated from those of Austrostipa and Anemanthele. This underlines a previous hypothesis of Tzvelev (1977) that most extant Stipeae are of hybrid origin. We also prepared an up-to-date survey and reviewed the chromosome number variation for our molecularly studied taxa and the whole tribe Stipeae. The chromosome base number patterns as well as dysploidy and whole-genome duplication events were interpreted in a phylogenetic framework. The rather coherent picture of chromosome number variation underlines the enormous phylogenetic and evolutionary significance of this frequently ignored character.
Copyright © 2021 Tkach, Nobis, Schneider, Becher, Winterfeld, Jacobs and Röser.

Entities:  

Keywords:  Anemanthele; Austrostipa; chromosome number; dysploidy; lemma micromorphology; phylogeny; taxonomy; whole-genome duplication

Year:  2021        PMID: 33552114      PMCID: PMC7862344          DOI: 10.3389/fpls.2020.630788

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  31 in total

1.  Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: a case study from Naucleeae (Rubiaceae).

Authors:  Sylvain G Razafimandimbison; Elizabeth A Kellogg; Birgitta Bremer
Journal:  Syst Biol       Date:  2004-04       Impact factor: 15.683

Review 2.  Ribosomal ITS sequences and plant phylogenetic inference.

Authors:  I Alvarez; J F Wendel
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

3.  Phylogenetic structure in the grass family (Poaceae): evidence from the nuclear gene phytochrome B.

Authors:  S Mathews; R C Tsai; E A Kellogg
Journal:  Am J Bot       Date:  2000-01       Impact factor: 3.844

Review 4.  Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants.

Authors:  Gonzalo Nieto Feliner; Josep A Rosselló
Journal:  Mol Phylogenet Evol       Date:  2007-02-15       Impact factor: 4.286

5.  Epidermal patterns of the lemma in some fossil and living grasses and their phylogenetic significance.

Authors:  J R Thomasson
Journal:  Science       Date:  1978-03-03       Impact factor: 47.728

6.  The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications.

Authors:  E S Buckler; A Ippolito; T P Holtsford
Journal:  Genetics       Date:  1997-03       Impact factor: 4.562

7.  Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences.

Authors:  P Catalán; E A Kellogg; R G Olmstead
Journal:  Mol Phylogenet Evol       Date:  1997-10       Impact factor: 4.286

8.  Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium-Festuca species complex.

Authors:  Melanie L Hand; Noel O I Cogan; Alan V Stewart; John W Forster
Journal:  BMC Evol Biol       Date:  2010-10-12       Impact factor: 3.260

9.  Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.

Authors:  Jeffery M Saarela; William P Wysocki; Craig F Barrett; Robert J Soreng; Jerrold I Davis; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin R Mayfield; Melvin R Duvall
Journal:  AoB Plants       Date:  2015-05-04       Impact factor: 3.276

10.  Synopsis of the tribe Stipeae (Poaceae) in Nepal.

Authors:  Marcin Nobis; Polina D Gudkova; Colin A Pendry
Journal:  PhytoKeys       Date:  2019-08-19       Impact factor: 1.635

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  2 in total

1.  Comparative analysis of two Korean irises (Iris ruthenica and I. uniflora, Iridaceae) based on plastome sequencing and micromorphology.

Authors:  Bokyung Choi; Inkyu Park; Soonku So; Hyeon-Ho Myeong; Jangseung Ryu; Yu-Eun Ahn; Kyu-Chan Shim; Jun-Ho Song; Tae-Soo Jang
Journal:  Sci Rep       Date:  2022-06-08       Impact factor: 4.996

2.  The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa.

Authors:  Evgenii Baiakhmetov; Cervin Guyomar; Ekaterina Shelest; Marcin Nobis; Polina D Gudkova
Journal:  Sci Rep       Date:  2021-07-28       Impact factor: 4.379

  2 in total

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