Literature DB >> 33547327

Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort.

Kristopher Opron1, Lesa A Begley1, John R Erb-Downward1, Christine Freeman1,2, Siddharth Madapoosi1, Neil E Alexis3, Igor Barjaktarevic4, R Graham Barr5, Eugene R Bleecker6, Russell P Bowler7, Stephanie A Christenson8, Alejandro P Comellas9, Christopher B Cooper4, David J Couper3, Claire M Doerschuk3, Mark T Dransfield10, MeiLan K Han1, Nadia N Hansel11, Annette T Hastie12, Eric A Hoffman9, Robert J Kaner13, Jerry Krishnan14, Wanda K O'Neal3, Victor E Ortega12, Robert Paine15, Stephen P Peters12, J Michael Wells10, Prescott G Woodruff8, Fernando J Martinez13, Jeffrey L Curtis1,16, Gary B Huffnagle1,17, Yvonne J Huang18.   

Abstract

Chronic obstructive pulmonary disease (COPD) is heterogeneous in development, progression, and phenotypes. Little is known about the lung microbiome, sampled by bronchoscopy, in milder COPD and its relationships to clinical features that reflect disease heterogeneity (lung function, symptom burden, and functional impairment). Using bronchoalveolar lavage fluid collected from 181 never-smokers and ever-smokers with or without COPD (GOLD 0-2) enrolled in the SubPopulations and InteRmediate Outcome Measures In COPD Study (SPIROMICS), we find that lung bacterial composition associates with several clinical features, in particular bronchodilator responsiveness, peak expiratory flow rate, and forced expiratory flow rate between 25 and 75% of FVC (FEF25-75). Measures of symptom burden (COPD Assessment Test) and functional impairment (six-minute walk distance) also associate with disparate lung microbiota composition. Drivers of these relationships include members of the Streptococcus, Prevotella, Veillonella, Staphylococcus, and Pseudomonas genera. Thus, lung microbiota differences may contribute to airway dysfunction and airway disease in milder COPD.

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Year:  2021        PMID: 33547327      PMCID: PMC7865064          DOI: 10.1038/s41522-021-00185-9

Source DB:  PubMed          Journal:  NPJ Biofilms Microbiomes        ISSN: 2055-5008            Impact factor:   8.462


  49 in total

1.  Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma.

Authors:  Yvonne J Huang; Craig E Nelson; Eoin L Brodie; Todd Z Desantis; Marshall S Baek; Jane Liu; Tanja Woyke; Martin Allgaier; Jim Bristow; Jeanine P Wiener-Kronish; E Rand Sutherland; Tonya S King; Nikolina Icitovic; Richard J Martin; William J Calhoun; Mario Castro; Loren C Denlinger; Emily Dimango; Monica Kraft; Stephen P Peters; Stephen I Wasserman; Michael E Wechsler; Homer A Boushey; Susan V Lynch
Journal:  J Allergy Clin Immunol       Date:  2010-12-30       Impact factor: 10.793

2.  Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Authors:  James J Kozich; Sarah L Westcott; Nielson T Baxter; Sarah K Highlander; Patrick D Schloss
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

3.  Clinical Significance of Symptoms in Smokers with Preserved Pulmonary Function.

Authors:  Prescott G Woodruff; R Graham Barr; Eugene Bleecker; Stephanie A Christenson; David Couper; Jeffrey L Curtis; Natalia A Gouskova; Nadia N Hansel; Eric A Hoffman; Richard E Kanner; Eric Kleerup; Stephen C Lazarus; Fernando J Martinez; Robert Paine; Stephen Rennard; Donald P Tashkin; MeiLan K Han
Journal:  N Engl J Med       Date:  2016-05-12       Impact factor: 91.245

Review 4.  The Yin and Yang of Streptococcus Lung Infections in Cystic Fibrosis: a Model for Studying Polymicrobial Interactions.

Authors:  Jessie E Scott; George A O'Toole
Journal:  J Bacteriol       Date:  2019-05-08       Impact factor: 3.490

5.  The interaction between Streptococcus spp. and Veillonella tobetsuensis in the early stages of oral biofilm formation.

Authors:  Izumi Mashima; Futoshi Nakazawa
Journal:  J Bacteriol       Date:  2015-04-27       Impact factor: 3.490

6.  Analysis of the lung microbiome in the "healthy" smoker and in COPD.

Authors:  John R Erb-Downward; Deborah L Thompson; Meilan K Han; Christine M Freeman; Lisa McCloskey; Lindsay A Schmidt; Vincent B Young; Galen B Toews; Jeffrey L Curtis; Baskaran Sundaram; Fernando J Martinez; Gary B Huffnagle
Journal:  PLoS One       Date:  2011-02-22       Impact factor: 3.240

7.  Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.

Authors:  Nicole M Davis; Diana M Proctor; Susan P Holmes; David A Relman; Benjamin J Callahan
Journal:  Microbiome       Date:  2018-12-17       Impact factor: 14.650

8.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Authors:  Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

9.  Cell-associated bacteria in the human lung microbiome.

Authors:  Robert P Dickson; John R Erb-Downward; Hallie C Prescott; Fernando J Martinez; Jeffrey L Curtis; Vibha N Lama; Gary B Huffnagle
Journal:  Microbiome       Date:  2014-08-18       Impact factor: 14.650

10.  Longitudinal profiling of the lung microbiome in the AERIS study demonstrates repeatability of bacterial and eosinophilic COPD exacerbations.

Authors:  David Mayhew; Nathalie Devos; Christophe Lambert; James R Brown; Stuart C Clarke; Viktoriya L Kim; Michal Magid-Slav; Bruce E Miller; Kristoffer K Ostridge; Ruchi Patel; Ganesh Sathe; Daniel F Simola; Karl J Staples; Ruby Sung; Ruth Tal-Singer; Andrew C Tuck; Stephanie Van Horn; Vincent Weynants; Nicholas P Williams; Jeanne-Marie Devaster; Tom M A Wilkinson
Journal:  Thorax       Date:  2018-01-31       Impact factor: 9.139

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  8 in total

Review 1.  Nutritional immunity: the impact of metals on lung immune cells and the airway microbiome during chronic respiratory disease.

Authors:  Claire Healy; Natalia Munoz-Wolf; Janné Strydom; Lynne Faherty; Niamh C Williams; Sarah Kenny; Seamas C Donnelly; Suzanne M Cloonan
Journal:  Respir Res       Date:  2021-04-29

Review 2.  Gut-lung Microbiota Interactions in Chronic Obstructive Pulmonary Disease (COPD): Potential Mechanisms Driving Progression to COPD and Epidemiological Data.

Authors:  Francesco De Nuccio; Prisco Piscitelli; Domenico Maurizio Toraldo
Journal:  Lung       Date:  2022-10-14       Impact factor: 3.777

Review 3.  Impact of Lung Microbiota on COPD.

Authors:  Cristina Russo; Valeria Colaianni; Giuseppe Ielo; Maria Stella Valle; Lucia Spicuzza; Lucia Malaguarnera
Journal:  Biomedicines       Date:  2022-06-06

4.  Differences of the Nasal Microbiome and Mycobiome by Clinical Characteristics of COPD Patients.

Authors:  Maura Alvarez Baumgartner; Chengchen Li; Thomas M Kuntz; Lina Nurhussien; Andrew J Synn; Wendy Y Sun; Jennifer E Kang; Peggy S Lai; Jeremy E Wilkinson; Mary B Rice
Journal:  Chronic Obstr Pulm Dis       Date:  2022-07-29

Review 5.  Respiratory Viral and Bacterial Exacerbations of COPD-The Role of the Airway Epithelium.

Authors:  Michelle E Love; David Proud
Journal:  Cells       Date:  2022-04-22       Impact factor: 7.666

Review 6.  The lung microbiome: progress and promise.

Authors:  Samantha A Whiteside; John E McGinniss; Ronald G Collman
Journal:  J Clin Invest       Date:  2021-08-02       Impact factor: 19.456

7.  Informatic analysis of the pulmonary microecology in non-cystic fibrosis bronchiectasis at three different stages.

Authors:  Yuchao Wang; Ying Chen; Chao Wu; Xiaohong Yang
Journal:  Open Life Sci       Date:  2022-02-28       Impact factor: 1.311

8.  Comparative analysis of the bronchoalveolar microbiome in Portuguese patients with different chronic lung disorders.

Authors:  Susana Seixas; Allison R Kolbe; Sílvia Gomes; Maria Sucena; Catarina Sousa; Luís Vaz Rodrigues; Gilberto Teixeira; Paula Pinto; Tiago Tavares de Abreu; Cristina Bárbara; Júlio Semedo; Leonor Mota; Ana Sofia Carvalho; Rune Matthiesen; Patrícia Isabel Marques; Marcos Pérez-Losada
Journal:  Sci Rep       Date:  2021-07-22       Impact factor: 4.379

  8 in total

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