Literature DB >> 33547292

Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma.

Eliezer M Van Allen1, Toni K Choueiri2, Ziad Bakouny3, David A Braun3, Sachet A Shukla4, Wenting Pan3, Xin Gao5, Yue Hou4, Abdallah Flaifel6, Stephen Tang3, Alice Bosma-Moody3, Meng Xiao He3, Natalie Vokes3, Jackson Nyman3, Wanling Xie7, Amin H Nassar3, Sarah Abou Alaiwi3, Ronan Flippot3, Gabrielle Bouchard3, John A Steinharter3, Pier Vitale Nuzzo3, Miriam Ficial6, Miriam Sant'Angelo6, Juliet Forman3,4,8, Jacob E Berchuck3, Shaan Dudani9, Kevin Bi3, Jihye Park3, Sabrina Camp3, Maura Sticco-Ivins6, Laure Hirsch3, Sylvan C Baca3, Megan Wind-Rotolo10, Petra Ross-Macdonald10, Maxine Sun3, Gwo-Shu Mary Lee3, Steven L Chang3, Xiao X Wei3, Bradley A McGregor3, Lauren C Harshman3, Giannicola Genovese11, Leigh Ellis6,12, Mark Pomerantz3, Michelle S Hirsch6, Matthew L Freedman3, Michael B Atkins13, Catherine J Wu3,8, Thai H Ho14, W Marston Linehan15, David F McDermott16, Daniel Y C Heng9, Srinivas R Viswanathan3, Sabina Signoretti6,12.   

Abstract

Sarcomatoid and rhabdoid (S/R) renal cell carcinoma (RCC) are highly aggressive tumors with limited molecular and clinical characterization. Emerging evidence suggests immune checkpoint inhibitors (ICI) are particularly effective for these tumors, although the biological basis for this property is largely unknown. Here, we evaluate multiple clinical trial and real-world cohorts of S/R RCC to characterize their molecular features, clinical outcomes, and immunologic characteristics. We find that S/R RCC tumors harbor distinctive molecular features that may account for their aggressive behavior, including BAP1 mutations, CDKN2A deletions, and increased expression of MYC transcriptional programs. We show that these tumors are highly responsive to ICI and that they exhibit an immune-inflamed phenotype characterized by immune activation, increased cytotoxic immune infiltration, upregulation of antigen presentation machinery genes, and PD-L1 expression. Our findings build on prior work and shed light on the molecular drivers of aggressivity and responsiveness to ICI of S/R RCC.

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Year:  2021        PMID: 33547292      PMCID: PMC7865061          DOI: 10.1038/s41467-021-21068-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  72 in total

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2.  Rhabdoid differentiation is associated with aggressive behavior in renal cell carcinoma: a clinicopathologic analysis of 76 cases with clinical follow-up.

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Journal:  Am J Surg Pathol       Date:  2014-09       Impact factor: 6.394

3.  Validation of OncoPanel: A Targeted Next-Generation Sequencing Assay for the Detection of Somatic Variants in Cancer.

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Journal:  Arch Pathol Lab Med       Date:  2017-03-03       Impact factor: 5.534

4.  New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1).

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Journal:  Eur J Cancer       Date:  2009-01       Impact factor: 9.162

5.  Efficacy and Safety of Nivolumab Plus Ipilimumab versus Sunitinib in First-line Treatment of Patients with Advanced Sarcomatoid Renal Cell Carcinoma.

Authors:  Nizar M Tannir; Sabina Signoretti; Toni K Choueiri; David F McDermott; Robert J Motzer; Abdallah Flaifel; Jean-Christophe Pignon; Miriam Ficial; Osvaldo Arén Frontera; Saby George; Thomas Powles; Frede Donskov; Michael R Harrison; Philippe Barthélémy; Scott S Tykodi; Judit Kocsis; Alain Ravaud; Jeronimo R Rodriguez-Cid; Sumanta K Pal; Andre M Murad; Yuko Ishii; Shruti Shally Saggi; M Brent McHenry; Brian I Rini
Journal:  Clin Cancer Res       Date:  2020-09-01       Impact factor: 12.531

Review 6.  Actin binding proteins: their ups and downs in metastatic life.

Authors:  Stephane R Gross
Journal:  Cell Adh Migr       Date:  2013-01-09       Impact factor: 3.405

Review 7.  The VHL/HIF axis in clear cell renal carcinoma.

Authors:  Chuan Shen; William G Kaelin
Journal:  Semin Cancer Biol       Date:  2012-06-13       Impact factor: 15.707

8.  BAP1 loss defines a new class of renal cell carcinoma.

Authors:  Samuel Peña-Llopis; Silvia Vega-Rubín-de-Celis; Arnold Liao; Nan Leng; Andrea Pavía-Jiménez; Shanshan Wang; Toshinari Yamasaki; Leah Zhrebker; Sharanya Sivanand; Patrick Spence; Lisa Kinch; Tina Hambuch; Suneer Jain; Yair Lotan; Vitaly Margulis; Arthur I Sagalowsky; Pia Banerji Summerour; Wareef Kabbani; S W Wendy Wong; Nick Grishin; Marc Laurent; Xian-Jin Xie; Christian D Haudenschild; Mark T Ross; David R Bentley; Payal Kapur; James Brugarolas
Journal:  Nat Genet       Date:  2012-06-10       Impact factor: 38.330

9.  TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells.

Authors:  Sanjeev Mariathasan; Shannon J Turley; Dorothee Nickles; Alessandra Castiglioni; Kobe Yuen; Yulei Wang; Edward E Kadel; Hartmut Koeppen; Jillian L Astarita; Rafael Cubas; Suchit Jhunjhunwala; Romain Banchereau; Yagai Yang; Yinghui Guan; Cecile Chalouni; James Ziai; Yasin Şenbabaoğlu; Stephen Santoro; Daniel Sheinson; Jeffrey Hung; Jennifer M Giltnane; Andrew A Pierce; Kathryn Mesh; Steve Lianoglou; Johannes Riegler; Richard A D Carano; Pontus Eriksson; Mattias Höglund; Loan Somarriba; Daniel L Halligan; Michiel S van der Heijden; Yohann Loriot; Jonathan E Rosenberg; Lawrence Fong; Ira Mellman; Daniel S Chen; Marjorie Green; Christina Derleth; Gregg D Fine; Priti S Hegde; Richard Bourgon; Thomas Powles
Journal:  Nature       Date:  2018-02-14       Impact factor: 49.962

10.  Determining cell type abundance and expression from bulk tissues with digital cytometry.

Authors:  Aaron M Newman; Chloé B Steen; Chih Long Liu; Andrew J Gentles; Aadel A Chaudhuri; Florian Scherer; Michael S Khodadoust; Mohammad S Esfahani; Bogdan A Luca; David Steiner; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Biotechnol       Date:  2019-05-06       Impact factor: 54.908

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  15 in total

1.  Immune-Related LncRNAs as Prognostic Factors for Pediatric Rhabdoid Tumor of the Kidney.

Authors:  Ye Hong; Yi Que; Yang Hu; Bo-Yun Shi; Jia Zhu; Juan Wang; Jun-Ting Huang; Fei-Fei Sun; Lian Zhang; Xin-Ke Zhou; Su-Ying Lu; Yi-Zhuo Zhang
Journal:  Dis Markers       Date:  2022-06-15       Impact factor: 3.464

2.  Overexpression of TP53INP2 Promotes Apoptosis in Clear Cell Renal Cell Cancer via Caspase-8/TRAF6 Signaling Pathway.

Authors:  Xunjia Li; Daixing Hu; Ying Li; Yan Luo; Bing Liang; Kexiao Yu; Weijian Xiong; Deyu Zuo
Journal:  J Immunol Res       Date:  2022-05-14       Impact factor: 4.493

3.  MicroRNA Expression in Clear Cell Renal Cell Carcinoma Cell Lines and Tumor Biopsies: Potential Therapeutic Targets.

Authors:  Samuel Swearson; Aseel O Rataan; Steven Eliason; Brad A Amendt; Yousef Zakharia; Aliasger K Salem; Thai Ho; Youcef M Rustum
Journal:  Int J Mol Sci       Date:  2022-05-17       Impact factor: 6.208

4.  Integrative clinical and molecular characterization of translocation renal cell carcinoma.

Authors:  Ziad Bakouny; Ananthan Sadagopan; Praful Ravi; Nebiyou Y Metaferia; Jiao Li; Shatha AbuHammad; Stephen Tang; Thomas Denize; Emma R Garner; Xin Gao; David A Braun; Laure Hirsch; John A Steinharter; Gabrielle Bouchard; Emily Walton; Destiny West; Chris Labaki; Shaan Dudani; Chun-Loo Gan; Vidyalakshmi Sethunath; Filipe L F Carvalho; Alma Imamovic; Cora Ricker; Natalie I Vokes; Jackson Nyman; Jacob E Berchuck; Jihye Park; Michelle S Hirsch; Rizwan Haq; Gwo-Shu Mary Lee; Bradley A McGregor; Steven L Chang; Adam S Feldman; Catherine J Wu; David F McDermott; Daniel Y C Heng; Sabina Signoretti; Eliezer M Van Allen; Toni K Choueiri; Srinivas R Viswanathan
Journal:  Cell Rep       Date:  2022-01-04       Impact factor: 9.995

5.  From Basic Science to Clinical Translation in Kidney Cancer: A Report from the Second Kidney Cancer Research Summit.

Authors:  Toni K Choueiri; Laurence Albiges; Michael B Atkins; Ziad Bakouny; Gennady Bratslavsky; David A Braun; Naomi B Haas; John B A G Haanen; A Ari Hakimi; Michael A S Jewett; Eric Jonasch; William G Kaelin; Payal Kapur; Chris Labaki; Bryan Lewis; David F McDermott; Sumanta K Pal; Kevin Pels; Susan Poteat; Thomas Powles; W Kimryn Rathmell; Brian I Rini; Sabina Signoretti; Nizar M Tannir; Robert G Uzzo; Hans J Hammers
Journal:  Clin Cancer Res       Date:  2022-03-01       Impact factor: 13.801

6.  A renal cell carcinoma tumorgraft platform to advance precision medicine.

Authors:  Roy Elias; Vanina T Tcheuyap; Akash K Kaushik; Nirmish Singla; Ming Gao; Oscar Reig Torras; Alana Christie; Aditi Mulgaonkar; Layton Woolford; Christina Stevens; Kavitha Priya Kettimuthu; Andrea Pavia-Jimenez; Lindsey K Boroughs; Allison Joyce; Marianna Dakanali; Hollis Notgrass; Vitaly Margulis; Jeffrey A Cadeddu; Ivan Pedrosa; Noelle S Williams; Xiankai Sun; Ralph J DeBerardinis; Orhan K Öz; Hua Zhong; Somasekar Seshagiri; Zora Modrusan; Brandi L Cantarel; Payal Kapur; James Brugarolas
Journal:  Cell Rep       Date:  2021-11-23       Impact factor: 9.995

7.  Histologic-Based Tumor-Associated Immune Cells Status in Clear Cell Renal Cell Carcinoma Correlates with Gene Signatures Related to Cancer Immunity and Clinical Outcomes.

Authors:  Chisato Ohe; Takashi Yoshida; Junichi Ikeda; Toyonori Tsuzuki; Riuko Ohashi; Haruyuki Ohsugi; Naho Atsumi; Ryosuke Yamaka; Ryoichi Saito; Yoshiki Yasukochi; Koichiro Higasa; Hidefumi Kinoshita; Koji Tsuta
Journal:  Biomedicines       Date:  2022-01-29

8.  Biomarker analysis from CheckMate 214: nivolumab plus ipilimumab versus sunitinib in renal cell carcinoma.

Authors:  Robert J Motzer; Toni K Choueiri; David F McDermott; Thomas Powles; Yann-Alexandre Vano; Saurabh Gupta; Jin Yao; Celine Han; Ron Ammar; Simon Papillon-Cavanagh; Shruti S Saggi; M Brent McHenry; Petra Ross-Macdonald; Megan Wind-Rotolo
Journal:  J Immunother Cancer       Date:  2022-03       Impact factor: 12.469

9.  Eosinophilic features in clear cell renal cell carcinoma correlate with outcomes of immune checkpoint and angiogenesis blockade.

Authors:  Takashi Yoshida; Chisato Ohe; Junichi Ikeda; Naho Atsumi; Haruyuki Ohsugi; Motohiko Sugi; Koichiro Higasa; Ryoichi Saito; Koji Tsuta; Tadashi Matsuda; Hidefumi Kinoshita
Journal:  J Immunother Cancer       Date:  2021-09       Impact factor: 13.751

10.  Integration of NRP1, RGS5, and FOXM1 expression, and tumour necrosis, as a postoperative prognostic classifier based on molecular subtypes of clear cell renal cell carcinoma.

Authors:  Takashi Yoshida; Chisato Ohe; Junichi Ikeda; Naho Atsumi; Ryoichi Saito; Hisanori Taniguchi; Haruyuki Ohsugi; Motohiko Sugi; Koji Tsuta; Tadashi Matsuda; Hidefumi Kinoshita
Journal:  J Pathol Clin Res       Date:  2021-07-02
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