Literature DB >> 33546374

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment.

Lucas André Cavalcanti Brandão1, Paola Maura Tricarico1, Rossella Gratton1, Almerinda Agrelli2, Luisa Zupin1, Haissam Abou-Saleh3, Ronald Moura1, Sergio Crovella3.   

Abstract

The high volume of information produced in the age of omics was and still is an important step to understanding several pathological processes, providing the enlightenment of complex molecular networks and the identification of molecular targets associated with many diseases. Despite these remarkable scientific advances, the majority of the results are disconnected and divergent, making their use limited. Skin diseases with alterations in the Notch signaling pathway were extensively studied during the omics era. In the GWAS Catalog, considering only studies on genomics association (GWAS), several works were deposited, some of which with divergent results. In addition, there are thousands of scientific articles available about these skin diseases. In our study, we focused our attention on skin diseases characterized by the impairment of Notch signaling, this pathway being of pivotal importance in the context of epithelial disorders. We considered the pathologies of five human skin diseases, Hidradenitis Suppurativa, Dowling Degos Disease, Adams-Oliver Syndrome, Psoriasis, and Atopic Dermatitis, in which the molecular alterations in the Notch signaling pathway have been reported. To this end, we started developing a new multiomics platform, PlatOMICs, to integrate and re-analyze omics information, searching for the molecular interactions involved in the pathogenesis of skin diseases with alterations in the Notch signaling pathway.

Entities:  

Keywords:  genomics; network interaction; omics; proteomics; skin diseases; transcriptomics

Mesh:

Substances:

Year:  2021        PMID: 33546374      PMCID: PMC7913517          DOI: 10.3390/ijms22041523

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  26 in total

1.  Abnormal epidermal barrier in the pathogenesis of contact dermatitis.

Authors:  Ehrhardt Proksch; Jochen Brasch
Journal:  Clin Dermatol       Date:  2012 May-Jun       Impact factor: 3.541

Review 2.  Notch signaling and the developing skin epidermis.

Authors:  Daniela Massi; John Panelos
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 3.  Mechanisms of sensory transduction in the skin.

Authors:  Ellen A Lumpkin; Michael J Caterina
Journal:  Nature       Date:  2007-02-22       Impact factor: 49.962

4.  Protein-coding variants contribute to the risk of atopic dermatitis and skin-specific gene expression.

Authors:  Sören Mucha; Hansjörg Baurecht; Natalija Novak; Elke Rodríguez; Saptarshi Bej; Gabriele Mayr; Hila Emmert; Dora Stölzl; Sascha Gerdes; Eun Suk Jung; Frauke Degenhardt; Matthias Hübenthal; Eva Ellinghaus; Jan Christian Kässens; Lars Wienbrandt; Wolfgang Lieb; Martina Müller-Nurasyid; Melanie Hotze; Nick Dand; Sarah Grosche; Ingo Marenholz; Andreas Arnold; Georg Homuth; Carsten O Schmidt; Ulrike Wehkamp; Markus M Nöthen; Per Hoffmann; Lavinia Paternoster; Marie Standl; Klaus Bønnelykke; Tarunveer S Ahluwalia; Hans Bisgaard; Annette Peters; Christian Gieger; Melanie Waldenberger; Holger Schulz; Konstantin Strauch; Thomas Werfel; Young-Ae Lee; Markus Wolfien; Philip Rosenstiel; Olaf Wolkenhauer; Stefan Schreiber; Andre Franke; Stephan Weidinger; David Ellinghaus
Journal:  J Allergy Clin Immunol       Date:  2019-11-09       Impact factor: 10.793

Review 5.  Role of purines in regulation of metabolic reprogramming.

Authors:  Zhenwei Tang; Wenrui Ye; Haotian Chen; Xinwei Kuang; Jia Guo; Minmin Xiang; Cong Peng; Xiang Chen; Hong Liu
Journal:  Purinergic Signal       Date:  2019-09-06       Impact factor: 3.765

6.  The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype.

Authors:  Donald Y M Leung; Agustin Calatroni; Livia S Zaramela; Petra K LeBeau; Nathan Dyjack; Kanwaljit Brar; Gloria David; Keli Johnson; Susan Leung; Marco Ramirez-Gama; Bo Liang; Cydney Rios; Michael T Montgomery; Brittany N Richers; Clifton F Hall; Kathryn A Norquest; John Jung; Irina Bronova; Simion Kreimer; C Conover Talbot; Debra Crumrine; Robert N Cole; Peter Elias; Karsten Zengler; Max A Seibold; Evgeny Berdyshev; Elena Goleva
Journal:  Sci Transl Med       Date:  2019-02-20       Impact factor: 17.956

7.  Multi-omics integration reveals molecular networks and regulators of psoriasis.

Authors:  Yuqi Zhao; Deepali Jhamb; Le Shu; Douglas Arneson; Deepak K Rajpal; Xia Yang
Journal:  BMC Syst Biol       Date:  2019-01-14

8.  Association of atopic dermatitis with obesity via a multi-omics approach: A protocol for a case-control study.

Authors:  Mi Ju Son; Geum-Jin Yang; Eun-Heui Jo; Yu-Hwa Shim; Su-Jin Kang; Ji-Eun Hong; Young-Eun Kim; Jung-Eun Lee; Jaemoo Chun; Seonghwan Park; Jeeyoun Jung; Min-Cheol Park
Journal:  Medicine (Baltimore)       Date:  2019-07       Impact factor: 1.817

Review 9.  Pleiotropic Role of Notch Signaling in Human Skin Diseases.

Authors:  Rossella Gratton; Paola Maura Tricarico; Chiara Moltrasio; Ana Sofia Lima Estevão de Oliveira; Lucas Brandão; Angelo Valerio Marzano; Luisa Zupin; Sergio Crovella
Journal:  Int J Mol Sci       Date:  2020-06-13       Impact factor: 5.923

10.  Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization.

Authors:  Hsin-Wen Chang; Di Yan; Rasnik Singh; Jared Liu; Xueyan Lu; Derya Ucmak; Kristina Lee; Ladan Afifi; Douglas Fadrosh; John Leech; Kimberly S Vasquez; Margaret M Lowe; Michael D Rosenblum; Tiffany C Scharschmidt; Susan V Lynch; Wilson Liao
Journal:  Microbiome       Date:  2018-09-05       Impact factor: 14.650

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  3 in total

1.  Holistic health record for Hidradenitis suppurativa patients.

Authors:  Paola Maura Tricarico; Chiara Moltrasio; Anton Gradišek; Angelo V Marzano; Vincent Flacher; Wacym Boufenghour; Esther von Stebut; Matthias Schmuth; Wolfram Jaschke; Matjaž Gams; Michele Boniotto; Sergio Crovella
Journal:  Sci Rep       Date:  2022-05-19       Impact factor: 4.996

2.  Variant Enrichment Analysis to Explore Pathways Functionality in Complex Autoinflammatory Skin Disorders through Whole Exome Sequencing Analysis.

Authors:  Lucas André Cavalcanti Brandão; Ronald Rodrigues de Moura; Angelo Valerio Marzano; Chiara Moltrasio; Paola Maura Tricarico; Sergio Crovella
Journal:  Int J Mol Sci       Date:  2022-02-18       Impact factor: 5.923

Review 3.  The Genomic Architecture of Hidradenitis Suppurativa-A Systematic Review.

Authors:  Nikolai Paul Pace; Dillon Mintoff; Isabella Borg
Journal:  Front Genet       Date:  2022-03-23       Impact factor: 4.599

  3 in total

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