Literature DB >> 33546161

A Multi-Objective Approach for Drug Repurposing in Preeclampsia.

Eduardo Tejera1,2, Yunierkis Pérez-Castillo1,3, Andrea Chamorro2, Alejandro Cabrera-Andrade1,4, Maria Eugenia Sanchez2.   

Abstract

Preeclampsia is a hypertensive disorder that occurs during pregnancy. It is a complex disease with unknown pathogenesis and the leading cause of fetal and maternal mortality during pregnancy. Using all drugs currently under clinical trial for preeclampsia, we extracted all their possible targets from the DrugBank and ChEMBL databases and labeled them as "targets". The proteins labeled as "off-targets" were extracted in the same way but while taking all antihypertensive drugs which are inhibitors of ACE and/or angiotensin receptor antagonist as query molecules. Classification models were obtained for each of the 55 total proteins (45 targets and 10 off-targets) using the TPOT pipeline optimization tool. The average accuracy of the models in predicting the external dataset for targets and off-targets was 0.830 and 0.850, respectively. The combinations of models maximizing their virtual screening performance were explored by combining the desirability function and genetic algorithms. The virtual screening performance metrics for the best model were: the Boltzmann-Enhanced Discrimination of ROC (BEDROC)α=160.9 = 0.258, the Enrichment Factor (EF)1% = 31.55 and the Area Under the Accumulation Curve (AUAC) = 0.831. The most relevant targets for preeclampsia were: AR, VDR, SLC6A2, NOS3 and CHRM4, while ABCG2, ERBB2, CES1 and REN led to the most relevant off-targets. A virtual screening of the DrugBank database identified estradiol, estriol, vitamins E and D, lynestrenol, mifrepristone, simvastatin, ambroxol, and some antibiotics and antiparasitics as drugs with potential application in the treatment of preeclampsia.

Entities:  

Keywords:  drugs repurposing; machine learning; multi-objective models; preeclampsia

Mesh:

Substances:

Year:  2021        PMID: 33546161      PMCID: PMC7913128          DOI: 10.3390/molecules26040777

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  77 in total

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Review 2.  Angiogenic Dysregulation in Pregnancy-Related Hypertension-A Role for Metformin.

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Journal:  Reprod Sci       Date:  2018-05-08       Impact factor: 3.060

Review 3.  Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection--what can we learn from earlier mistakes?

Authors:  Johannes Kirchmair; Patrick Markt; Simona Distinto; Gerhard Wolber; Thierry Langer
Journal:  J Comput Aided Mol Des       Date:  2008-01-15       Impact factor: 3.686

4.  Analysis of differentially expressed genes in placental tissues of preeclampsia patients using microarray combined with the Connectivity Map database.

Authors:  Y Song; J Liu; S Huang; L Zhang
Journal:  Placenta       Date:  2013-10-06       Impact factor: 3.481

5.  Investigating the preventive effect of vitamins C and E on preeclampsia in nulliparous pregnant women.

Authors:  Nahid Lorzadeh; Yasaman Kazemirad; Nastran Kazemirad
Journal:  J Perinat Med       Date:  2020-07-28       Impact factor: 1.901

Review 6.  A meta-analysis of adverse perinatal outcomes in women with asthma.

Authors:  V E Murphy; J A Namazy; H Powell; M Schatz; C Chambers; J Attia; P G Gibson
Journal:  BJOG       Date:  2011-07-13       Impact factor: 6.531

7.  Antiretrovirals causing severe pre-eclampsia.

Authors:  Lloyd Tooke; Linda Riemer; Mushi Matjila; Michael Harrison
Journal:  Pregnancy Hypertens       Date:  2016-04-26       Impact factor: 2.899

8.  Maternal use of loperamide in early pregnancy and delivery outcome.

Authors:  Bengt Källén; Emma Nilsson; Petra Otterblad Olausson
Journal:  Acta Paediatr       Date:  2008-05       Impact factor: 2.299

Review 9.  Androgens in maternal vascular and placental function: implications for preeclampsia pathogenesis

Authors:  Sathish Kumar; Geoffrey H Gordon; David H Abbott; Jay S Mishra
Journal:  Reproduction       Date:  2018-10-16       Impact factor: 3.906

10.  PubChem 2019 update: improved access to chemical data.

Authors:  Sunghwan Kim; Jie Chen; Tiejun Cheng; Asta Gindulyte; Jia He; Siqian He; Qingliang Li; Benjamin A Shoemaker; Paul A Thiessen; Bo Yu; Leonid Zaslavsky; Jian Zhang; Evan E Bolton
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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