Literature DB >> 33546092

Small-Molecule Anti-HIV-1 Agents Based on HIV-1 Capsid Proteins.

Takuya Kobayakawa1, Masaru Yokoyama2, Kohei Tsuji1, Masayuki Fujino3, Masaki Kurakami1, Sayaka Boku1, Miyuki Nakayama1, Moemi Kaneko1, Nami Ohashi1, Osamu Kotani2, Tsutomu Murakami3, Hironori Sato2, Hirokazu Tamamura1.   

Abstract

The capsid of human immunodeficiency virus type 1 (HIV-1) is a shell that encloses viral RNA and is highly conserved among many strains of the virus. It forms a conical structure by assembling oligomers of capsid (CA) proteins. CA dysfunction is expected to be an important target of suppression of HIV-1 replication, and it is important to understand a new mechanism that could lead to the CA dysfunction. A drug targeting CA however, has not been developed to date. Hydrophobic interactions between two CA molecules via Trp184/Met185 in CA were recently reported to be important for stabilization of the multimeric structure of CA. In the present study, a small molecule designed by in silico screening as a dipeptide mimic of Trp184 and Met185 in the interaction site, was synthesized and its significant anti-HIV-1 activity was confirmed. Structure activity relationship (SAR) studies of its derivatives were performed and provided results that are expected to be useful in the future design and development of novel anti-HIV agents targeting CA.

Entities:  

Keywords:  anti-HIV; capsid; dipeptide mimic; in silico screening

Year:  2021        PMID: 33546092      PMCID: PMC7913237          DOI: 10.3390/biom11020208

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  65 in total

1.  Enhanced exposure of human immunodeficiency virus type 1 primary isolate neutralization epitopes through binding of CD4 mimetic compounds.

Authors:  Kazuhisa Yoshimura; Shigeyoshi Harada; Junji Shibata; Makiko Hatada; Yuko Yamada; Chihiro Ochiai; Hirokazu Tamamura; Shuzo Matsushita
Journal:  J Virol       Date:  2010-05-26       Impact factor: 5.103

Review 2.  HIV-1 gag proteins: diverse functions in the virus life cycle.

Authors:  E O Freed
Journal:  Virology       Date:  1998-11-10       Impact factor: 3.616

3.  Anti-HIV screening for cell-penetrating peptides using chloroquine and identification of anti-HIV peptides derived from matrix proteins.

Authors:  Takaaki Mizuguchi; Nami Ohashi; Wataru Nomura; Mao Komoriya; Chie Hashimoto; Naoki Yamamoto; Tsutomu Murakami; Hirokazu Tamamura
Journal:  Bioorg Med Chem       Date:  2015-06-15       Impact factor: 3.641

4.  MAB, a generally applicable molecular force field for structure modelling in medicinal chemistry.

Authors:  P R Gerber; K Müller
Journal:  J Comput Aided Mol Des       Date:  1995-06       Impact factor: 3.686

Review 5.  HIV-1 Capsid Inhibitors as Antiretroviral Agents.

Authors:  Suzie Thenin-Houssier; Susana T Valente
Journal:  Curr HIV Res       Date:  2016       Impact factor: 1.581

6.  Discovery of novel small-molecule HIV-1 replication inhibitors that stabilize capsid complexes.

Authors:  Louie Lamorte; Steve Titolo; Christopher T Lemke; Nathalie Goudreau; Jean-François Mercier; Elizabeth Wardrop; Vaibhav B Shah; Uta K von Schwedler; Charles Langelier; Soma S R Banik; Christopher Aiken; Wesley I Sundquist; Stephen W Mason
Journal:  Antimicrob Agents Chemother       Date:  2013-07-01       Impact factor: 5.191

7.  Discovery of phenylalanine derivatives as potent HIV-1 capsid inhibitors from click chemistry-based compound library.

Authors:  Gaochan Wu; Waleed A Zalloum; Megan E Meuser; Lanlan Jing; Dongwei Kang; Chin-Ho Chen; Ye Tian; Fangfang Zhang; Simon Cocklin; Kuo-Hsiung Lee; Xinyong Liu; Peng Zhan
Journal:  Eur J Med Chem       Date:  2018-09-11       Impact factor: 6.514

8.  Soluble-type small-molecule CD4 mimics as HIV entry inhibitors.

Authors:  Takuya Kobayakawa; Kiju Konno; Nami Ohashi; Kohei Takahashi; Ami Masuda; Kazuhisa Yoshimura; Shigeyoshi Harada; Hirokazu Tamamura
Journal:  Bioorg Med Chem Lett       Date:  2019-01-11       Impact factor: 2.823

9.  A low-molecular-weight inhibitor against the chemokine receptor CXCR4: a strong anti-HIV peptide T140.

Authors:  H Tamamura; Y Xu; T Hattori; X Zhang; R Arakaki; K Kanbara; A Omagari; A Otaka; T Ibuka; N Yamamoto; H Nakashima; N Fujii
Journal:  Biochem Biophys Res Commun       Date:  1998-12-30       Impact factor: 3.575

10.  Clinical targeting of HIV capsid protein with a long-acting small molecule.

Authors:  John O Link; Martin S Rhee; Winston C Tse; Jim Zheng; John R Somoza; William Rowe; Rebecca Begley; Anna Chiu; Andrew Mulato; Derek Hansen; Eric Singer; Luong K Tsai; Rujuta A Bam; Chien-Hung Chou; Eda Canales; Gediminas Brizgys; Jennifer R Zhang; Jiayao Li; Michael Graupe; Philip Morganelli; Qi Liu; Qiaoyin Wu; Randall L Halcomb; Roland D Saito; Scott D Schroeder; Scott E Lazerwith; Steven Bondy; Debi Jin; Magdeleine Hung; Nikolai Novikov; Xiaohong Liu; Armando G Villaseñor; Carina E Cannizzaro; Eric Y Hu; Robert L Anderson; Todd C Appleby; Bing Lu; Judy Mwangi; Albert Liclican; Anita Niedziela-Majka; Giuseppe A Papalia; Melanie H Wong; Stephanie A Leavitt; Yili Xu; David Koditek; George J Stepan; Helen Yu; Nikos Pagratis; Sheila Clancy; Shekeba Ahmadyar; Terrence Z Cai; Scott Sellers; Scott A Wolckenhauer; John Ling; Christian Callebaut; Nicolas Margot; Renee R Ram; Ya-Pei Liu; Rob Hyland; Gary I Sinclair; Peter J Ruane; Gordon E Crofoot; Cheryl K McDonald; Diana M Brainard; Latesh Lad; Swami Swaminathan; Wesley I Sundquist; Roman Sakowicz; Anne E Chester; William E Lee; Eric S Daar; Stephen R Yant; Tomas Cihlar
Journal:  Nature       Date:  2020-07-01       Impact factor: 49.962

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  2 in total

1.  Uracil derivatives as HIV-1 capsid protein inhibitors: design, in silico, in vitro and cytotoxicity studies.

Authors:  Deepthi Ramesh; Amaresh Kumar Mohanty; Anirban De; Balaji Gowrivel Vijayakumar; Aiswarya Sethumadhavan; Suresh Kumar Muthuvel; Maheswaran Mani; Tharanikkarasu Kannan
Journal:  RSC Adv       Date:  2022-06-13       Impact factor: 4.036

Review 2.  Rotten to the core: antivirals targeting the HIV-1 capsid core.

Authors:  William M McFadden; Alexa A Snyder; Karen A Kirby; Philip R Tedbury; Monika Raj; Zhengqiang Wang; Stefan G Sarafianos
Journal:  Retrovirology       Date:  2021-12-22       Impact factor: 3.768

  2 in total

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