Literature DB >> 33545664

On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.

Marjon S van Ruiten1, Benjamin D Rowland2.   

Abstract

Cohesin and CTCF are key to the 3D folding of interphase chromosomes. Cohesin forms chromatin loops via loop extrusion, a process that involves the formation and enlargement of DNA loops. The architectural protein CTCF controls this process by acting as an anchor for chromatin looping. How CTCF controls cohesin has long been a mystery. Recent work shows that CTCF dictates chromatin looping via a direct interaction of its N-terminus with cohesin. CTCF's ability to regulate chromatin looping turns out to also be partially dependent on several RNA-binding domains. In this review, we discuss recent insights and consider how cohesin and CTCF together may orchestrate the folding of the genome into chromosomal loops.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3D genome; CTCF; Chromosomes; Cohesin; Loop extrusion

Year:  2021        PMID: 33545664     DOI: 10.1016/j.ceb.2020.12.001

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  7 in total

Review 1.  New insights into genome folding by loop extrusion from inducible degron technologies.

Authors:  Elzo de Wit; Elphège P Nora
Journal:  Nat Rev Genet       Date:  2022-09-30       Impact factor: 59.581

Review 2.  Large-Scale Chromatin Rearrangements in Cancer.

Authors:  Kosuke Yamaguchi; Xiaoying Chen; Asami Oji; Ichiro Hiratani; Pierre-Antoine Defossez
Journal:  Cancers (Basel)       Date:  2022-05-12       Impact factor: 6.575

3.  A Robust Protocol for Investigating the Cohesin Complex by ChIP-Sequencing.

Authors:  Macarena Moronta Gines; Kerstin S Wendt
Journal:  Methods Mol Biol       Date:  2022

Review 4.  The 3D Genome: From Structure to Function.

Authors:  Tapan Kumar Mohanta; Awdhesh Kumar Mishra; Ahmed Al-Harrasi
Journal:  Int J Mol Sci       Date:  2021-10-27       Impact factor: 5.923

Review 5.  3D chromatin architecture and transcription regulation in cancer.

Authors:  Siwei Deng; Yuliang Feng; Siim Pauklin
Journal:  J Hematol Oncol       Date:  2022-05-04       Impact factor: 23.168

6.  RNA helicase-dependent gene looping impacts messenger RNA processing.

Authors:  Sophie Terrone; Jessica Valat; Nicolas Fontrodona; Guillaume Giraud; Jean-Baptiste Claude; Emmanuel Combe; Audrey Lapendry; Hélène Polvèche; Lamya Ben Ameur; Arnaud Duvermy; Laurent Modolo; Pascal Bernard; Franck Mortreux; Didier Auboeuf; Cyril F Bourgeois
Journal:  Nucleic Acids Res       Date:  2022-08-30       Impact factor: 19.160

7.  The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism.

Authors:  Démi van Gent; Ángela Sedeño Cacciatore; Marjon S van Ruiten; Astrid Fauster; Laureen Willems; Maarten L Hekkelman; Liesbeth Hoekman; Maarten Altelaar; Judith H I Haarhuis; Thijn R Brummelkamp; Elzo de Wit; Benjamin D Rowland
Journal:  Nat Struct Mol Biol       Date:  2022-06-16       Impact factor: 18.361

  7 in total

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