Literature DB >> 33545034

NMR spectroscopy captures the essential role of dynamics in regulating biomolecular function.

T Reid Alderson1, Lewis E Kay2.   

Abstract

Biomolecules are in constant motion. To understand how they function, and why malfunctions can cause disease, it is necessary to describe their three-dimensional structures in terms of dynamic conformational ensembles. Here, we demonstrate how nuclear magnetic resonance (NMR) spectroscopy provides an essential, dynamic view of structural biology that captures biomolecular motions at atomic resolution. We focus on examples that emphasize the diversity of biomolecules and biochemical applications that are amenable to NMR, such as elucidating functional dynamics in large molecular machines, characterizing transient conformations implicated in the onset of disease, and obtaining atomic-level descriptions of intrinsically disordered regions that make weak interactions involved in liquid-liquid phase separation. Finally, we discuss the pivotal role that NMR has played in driving forward our understanding of the biomolecular dynamics-function paradigm.
Copyright © 2020 Elsevier Inc. All rights reserved.

Year:  2021        PMID: 33545034     DOI: 10.1016/j.cell.2020.12.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  19 in total

1.  Progress toward automated methyl assignments for methyl-TROSY applications.

Authors:  Mary C Clay; Tamjeed Saleh; Samuel Kamatham; Paolo Rossi; Charalampos G Kalodimos
Journal:  Structure       Date:  2021-12-15       Impact factor: 5.006

Review 2.  High throughput and quantitative enzymology in the genomic era.

Authors:  D A Mokhtari; M J Appel; P M Fordyce; D Herschlag
Journal:  Curr Opin Struct Biol       Date:  2021-09-27       Impact factor: 6.809

3.  Detecting and Characterizing Interactions of Metabolites with Proteins by Saturation Transfer Difference Nuclear Magnetic Resonance (STD NMR) Spectroscopy.

Authors:  Ruslan Nedielkov; Heiko M Möller
Journal:  Methods Mol Biol       Date:  2023

4.  A Chemical Biology Primer for NMR Spectroscopists.

Authors:  Evan T Clark; Elanor E Sievers; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-02-18

5.  A litmus test for classifying recognition mechanisms of transiently binding proteins.

Authors:  Kalyan S Chakrabarti; Simon Olsson; Supriya Pratihar; Karin Giller; Kerstin Overkamp; Ko On Lee; Vytautas Gapsys; Kyoung-Seok Ryu; Bert L de Groot; Frank Noé; Stefan Becker; Donghan Lee; Thomas R Weikl; Christian Griesinger
Journal:  Nat Commun       Date:  2022-07-01       Impact factor: 17.694

6.  Mapping the conformational energy landscape of Abl kinase using ClyA nanopore tweezers.

Authors:  Fanjun Li; Monifa A Fahie; Kaitlyn M Gilliam; Ryan Pham; Min Chen
Journal:  Nat Commun       Date:  2022-06-20       Impact factor: 17.694

7.  Dynamic Na+/H+ exchanger 1 (NHE1) - calmodulin complexes of varying stoichiometry and structure regulate Ca2+-dependent NHE1 activation.

Authors:  Lise M Sjøgaard-Frich; Andreas Prestel; Emilie S Pedersen; Marc Severin; Kristian Kølby Kristensen; Johan G Olsen; Birthe B Kragelund; Stine Falsig Pedersen
Journal:  Elife       Date:  2021-03-03       Impact factor: 8.140

Review 8.  Developments in solution-state NMR yield broader and deeper views of the dynamic ensembles of nucleic acids.

Authors:  Bei Liu; Honglue Shi; Hashim M Al-Hashimi
Journal:  Curr Opin Struct Biol       Date:  2021-04-06       Impact factor: 7.786

9.  Measuring radiofrequency fields in NMR spectroscopy using offset-dependent nutation profiles.

Authors:  Ahallya Jaladeep; Claris Niya Varghese; Ashok Sekhar
Journal:  J Magn Reson       Date:  2021-07-06       Impact factor: 2.734

Review 10.  Generating Ensembles of Dynamic Misfolding Proteins.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Sheena E Radford
Journal:  Front Neurosci       Date:  2022-03-31       Impact factor: 4.677

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