Literature DB >> 33542954

Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar.

Yixi Wang1, Tijana Cvetković1, Amy N A Aritsara2,3, Angelo D A Carrion1, Joeri S Strijk1,4.   

Abstract

Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity. Species in the genus are mostly restricted to a thin belt along the eastern edge of the island and remain under intense pressure due to deforestation for logging, mining and slash-and-burn agriculture ('tavy'), despite national pledges to curb biodiversity losses and increase park protection to combat illegal logging and poaching. Here we report the complete chloroplast genome sequence of this species to support ongoing efforts to complete the (sub-)tribal classification of the family. The chloroplast sequence of F. ghesquiereana was 160,194 bp in length, including two inverted repeat regions of 26,093 bp, a large single-copy region of 89,041 bp and a small single-copy region of 18,967 bp. A total of 160 genes were annotated, of which 115 are coding, 37 are tRNA genes, and eight are rRNA genes. The overall GC content was 39%; this was higher in the IRs (43.4%) when compared to the LSC (30.7%) and the SSC (33.9%) regions. A Maximum Likelihood phylogenetic analysis with a selection of other plastomes in Annonaceae placed F. ghesquiereana as sister to Meiogyne hainanensis (Merr.) in subfamily Malmeoideae.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Annonaceae; Fenerivia ghesquieriana; Malmeoideae; complete chloroplast genome; phylogenomics

Year:  2021        PMID: 33542954      PMCID: PMC7836981          DOI: 10.1080/23802359.2020.1855604

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

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6.  Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes.

Authors:  Thomas L P Couvreur; Andrew J Helmstetter; Erik J M Koenen; Kevin Bethune; Rita D Brandão; Stefan A Little; Hervé Sauquet; Roy H J Erkens
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7.  ECuADOR-Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines.

Authors:  Damien D Hinsinger; Joeri S Strijk; Angelo D Armijos Carrion
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  7 in total

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