Literature DB >> 33542799

New Construction of Family of MLCS Algorithms.

Haihe Shi1, Jun Wang1.   

Abstract

The multiple longest common subsequence (MLCS) problem involves finding all the longest common subsequences of multiple character sequences. This problem is encountered in a variety of areas, including data mining, text processing, and bioinformatics, and is particularly important for biological sequence analysis. By taking the MLCS problem and algorithms for its solution as research domain, this study analyzes the domain of multiple longest common subsequence algorithms, extracts features that algorithms in the domain do and do not have in common, and creates a domain feature model for the MLCS problem by using generic programming, domain engineering, abstraction, and related technologies. A component library for the domain is designed based on the feature model for the MLCS problem, and the partition and recur (PAR) platform is used to ensure that highly reliable MLCS algorithms can be quickly assembled through component assembly. This study provides a valuable reference for obtaining rapid solutions to problems of biological sequence analysis and improves the reliability and assembly flexibility of assembling algorithms.
Copyright © 2021 Haihe Shi and Jun Wang.

Entities:  

Year:  2021        PMID: 33542799      PMCID: PMC7843170          DOI: 10.1155/2021/6636710

Source DB:  PubMed          Journal:  J Healthc Eng        ISSN: 2040-2295            Impact factor:   2.682


  7 in total

1.  Deposition and extension approach to find longest common subsequence for thousands of long sequences.

Authors:  Kang Ning
Journal:  Comput Biol Chem       Date:  2010-05-11       Impact factor: 2.877

2.  A fast and memory efficient MLCS algorithm by character merging for DNA sequences alignment.

Authors:  Sen Liu; Yuping Wang; Wuning Tong; Shiwei Wei
Journal:  Bioinformatics       Date:  2020-02-15       Impact factor: 6.937

3.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

4.  Sequence Alignment and Homology Search with BLAST and ClustalW.

Authors:  Jui-Hung Hung; Zhiping Weng
Journal:  Cold Spring Harb Protoc       Date:  2016-11-01

5.  New goals for the U.S. Human Genome Project: 1998-2003.

Authors:  F S Collins; A Patrinos; E Jordan; A Chakravarti; R Gesteland; L Walters
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

6.  A fast parallel algorithm for finding the longest common sequence of multiple biosequences.

Authors:  Yixin Chen; Andrew Wan; Wei Liu
Journal:  BMC Bioinformatics       Date:  2006-12-12       Impact factor: 3.169

7.  A Novel Efficient Graph Model for the Multiple Longest Common Subsequences (MLCS) Problem.

Authors:  Zhan Peng; Yuping Wang
Journal:  Front Genet       Date:  2017-08-09       Impact factor: 4.599

  7 in total

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