Literature DB >> 33542327

Classification of paediatric brain tumours by diffusion weighted imaging and machine learning.

Jan Novak1,2,3,4, Niloufar Zarinabad1,2, Heather Rose1,2, Theodoros Arvanitis1,2,5, Lesley MacPherson6, Benjamin Pinkey6, Adam Oates6, Patrick Hales7, Richard Grundy8, Dorothee Auer9,10, Daniel Rodriguez Gutierrez8,11, Tim Jaspan8,12, Shivaram Avula13, Laurence Abernethy13, Ramneek Kaur7, Darren Hargrave14, Dipayan Mitra15, Simon Bailey16, Nigel Davies1,2,17, Christopher Clark7, Andrew Peet18,19.   

Abstract

To determine if apparent diffusion coefficients (ADC) can discriminate between posterior fossa brain tumours on a multicentre basis. A total of 124 paediatric patients with posterior fossa tumours (including 55 Medulloblastomas, 36 Pilocytic Astrocytomas and 26 Ependymomas) were scanned using diffusion weighted imaging across 12 different hospitals using a total of 18 different scanners. Apparent diffusion coefficient maps were produced and histogram data was extracted from tumour regions of interest. Total histograms and histogram metrics (mean, variance, skew, kurtosis and 10th, 20th and 50th quantiles) were used as data input for classifiers with accuracy determined by tenfold cross validation. Mean ADC values from the tumour regions of interest differed between tumour types, (ANOVA P < 0.001). A cut off value for mean ADC between Ependymomas and Medulloblastomas was found to be of 0.984 × 10-3 mm2 s-1 with sensitivity 80.8% and specificity 80.0%. Overall classification for the ADC histogram metrics were 85% using Naïve Bayes and 84% for Random Forest classifiers. The most commonly occurring posterior fossa paediatric brain tumours can be classified using Apparent Diffusion Coefficient histogram values to a high accuracy on a multicentre basis.

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Year:  2021        PMID: 33542327      PMCID: PMC7862387          DOI: 10.1038/s41598-021-82214-3

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  19 in total

1.  Apparent diffusion coefficient (ADC) measurements in pancreatic adenocarcinoma: A preliminary study of the effect of region of interest on ADC values and interobserver variability.

Authors:  Chao Ma; Li Liu; Jing Li; Li Wang; Lu-Guang Chen; Yong Zhang; Shi-Yue Chen; Jian-Ping Lu
Journal:  J Magn Reson Imaging       Date:  2015-07-16       Impact factor: 4.813

Review 2.  MRI protocols for imaging paediatric brain tumours.

Authors:  E Craig; D J A Connolly; P D Griffiths; A Raghavan; V Lee; R Batty
Journal:  Clin Radiol       Date:  2012-06-15       Impact factor: 2.350

3.  Discrimination of paediatric brain tumours using apparent diffusion coefficient histograms.

Authors:  Jonathan G Bull; Dawn E Saunders; Christopher A Clark
Journal:  Eur Radiol       Date:  2011-09-15       Impact factor: 5.315

4.  Diagnostic value of peritumoral minimum apparent diffusion coefficient for differentiation of glioblastoma multiforme from solitary metastatic lesions.

Authors:  Eun Ja Lee; Karel terBrugge; David Mikulis; Dae Seob Choi; Jong Myon Bae; Seon Kyu Lee; Soon Young Moon
Journal:  AJR Am J Roentgenol       Date:  2011-01       Impact factor: 3.959

5.  Quantitative short echo time 1H-MR spectroscopy of untreated pediatric brain tumors: preoperative diagnosis and characterization.

Authors:  A Panigrahy; M D Krieger; I Gonzalez-Gomez; X Liu; J G McComb; J L Finlay; M D Nelson; F H Gilles; S Blüml
Journal:  AJNR Am J Neuroradiol       Date:  2006-03       Impact factor: 3.825

6.  Multi-centre reproducibility of diffusion MRI parameters for clinical sequences in the brain.

Authors:  Matthew Grech-Sollars; Patrick W Hales; Keiko Miyazaki; Felix Raschke; Daniel Rodriguez; Martin Wilson; Simrandip K Gill; Tina Banks; Dawn E Saunders; Jonathan D Clayden; Matt N Gwilliam; Thomas R Barrick; Paul S Morgan; Nigel P Davies; James Rossiter; Dorothee P Auer; Richard Grundy; Martin O Leach; Franklyn A Howe; Andrew C Peet; Chris A Clark
Journal:  NMR Biomed       Date:  2015-04       Impact factor: 4.044

Review 7.  Imaging biomarker roadmap for cancer studies.

Authors:  James P B O'Connor; Eric O Aboagye; Judith E Adams; Hugo J W L Aerts; Sally F Barrington; Ambros J Beer; Ronald Boellaard; Sarah E Bohndiek; Michael Brady; Gina Brown; David L Buckley; Thomas L Chenevert; Laurence P Clarke; Sandra Collette; Gary J Cook; Nandita M deSouza; John C Dickson; Caroline Dive; Jeffrey L Evelhoch; Corinne Faivre-Finn; Ferdia A Gallagher; Fiona J Gilbert; Robert J Gillies; Vicky Goh; John R Griffiths; Ashley M Groves; Steve Halligan; Adrian L Harris; David J Hawkes; Otto S Hoekstra; Erich P Huang; Brian F Hutton; Edward F Jackson; Gordon C Jayson; Andrew Jones; Dow-Mu Koh; Denis Lacombe; Philippe Lambin; Nathalie Lassau; Martin O Leach; Ting-Yim Lee; Edward L Leen; Jason S Lewis; Yan Liu; Mark F Lythgoe; Prakash Manoharan; Ross J Maxwell; Kenneth A Miles; Bruno Morgan; Steve Morris; Tony Ng; Anwar R Padhani; Geoff J M Parker; Mike Partridge; Arvind P Pathak; Andrew C Peet; Shonit Punwani; Andrew R Reynolds; Simon P Robinson; Lalitha K Shankar; Ricky A Sharma; Dmitry Soloviev; Sigrid Stroobants; Daniel C Sullivan; Stuart A Taylor; Paul S Tofts; Gillian M Tozer; Marcel van Herk; Simon Walker-Samuel; James Wason; Kaye J Williams; Paul Workman; Thomas E Yankeelov; Kevin M Brindle; Lisa M McShane; Alan Jackson; John C Waterton
Journal:  Nat Rev Clin Oncol       Date:  2016-10-11       Impact factor: 66.675

8.  Radiomics in paediatric neuro-oncology: A multicentre study on MRI texture analysis.

Authors:  Ahmed E Fetit; Jan Novak; Daniel Rodriguez; Dorothee P Auer; Christopher A Clark; Richard G Grundy; Andrew C Peet; Theodoros N Arvanitis
Journal:  NMR Biomed       Date:  2017-10-26       Impact factor: 4.044

9.  Three-dimensional textural features of conventional MRI improve diagnostic classification of childhood brain tumours.

Authors:  Ahmed E Fetit; Jan Novak; Andrew C Peet; Theodoros N Arvanitits
Journal:  NMR Biomed       Date:  2015-08-09       Impact factor: 4.044

10.  Texture analysis of T1 - and T2 -weighted MR images and use of probabilistic neural network to discriminate posterior fossa tumours in children.

Authors:  Eleni Orphanidou-Vlachou; Nikolaos Vlachos; Nigel P Davies; Theodoros N Arvanitis; Richard G Grundy; Andrew C Peet
Journal:  NMR Biomed       Date:  2014-04-13       Impact factor: 4.044

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  8 in total

Review 1.  European Society for Paediatric Oncology (SIOPE) MRI guidelines for imaging patients with central nervous system tumours.

Authors:  Shivaram Avula; Andrew Peet; Giovanni Morana; Paul Morgan; Monika Warmuth-Metz; Tim Jaspan
Journal:  Childs Nerv Syst       Date:  2021-05-10       Impact factor: 1.475

2.  Application of Apparent Diffusion Coefficient Histogram Metrics for Differentiation of Pediatric Posterior Fossa Tumors : A Large Retrospective Study and Brief Review of Literature.

Authors:  Fabrício Guimarães Gonçalves; Alireza Zandifar; Jorge Du Ub Kim; Luis Octavio Tierradentro-García; Adarsh Ghosh; Dmitry Khrichenko; Savvas Andronikou; Arastoo Vossough
Journal:  Clin Neuroradiol       Date:  2022-06-08       Impact factor: 3.649

3.  Diagnostic accuracy of qualitative MRI in 550 paediatric brain tumours: evaluating current practice in the computational era.

Authors:  Luke Dixon; Gurpreet Kaur Jandu; Jai Sidpra; Kshitij Mankad
Journal:  Quant Imaging Med Surg       Date:  2022-01

Review 4.  Radiomics and radiogenomics in pediatric neuro-oncology: A review.

Authors:  Rachel Madhogarhia; Debanjan Haldar; Sina Bagheri; Ariana Familiar; Hannah Anderson; Sherjeel Arif; Arastoo Vossough; Phillip Storm; Adam Resnick; Christos Davatzikos; Anahita Fathi Kazerooni; Ali Nabavizadeh
Journal:  Neurooncol Adv       Date:  2022-05-27

Review 5.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

6.  Dynamic susceptibility-contrast magnetic resonance imaging with contrast agent leakage correction aids in predicting grade in pediatric brain tumours: a multicenter study.

Authors:  Stephanie B Withey; Lesley MacPherson; Adam Oates; Stephen Powell; Jan Novak; Laurence Abernethy; Barry Pizer; Richard Grundy; Paul S Morgan; Simon Bailey; Dipayan Mitra; Theodoros N Arvanitis; Dorothee P Auer; Shivaram Avula; Andrew C Peet
Journal:  Pediatr Radiol       Date:  2022-03-15

7.  Combining multi-site magnetic resonance imaging with machine learning predicts survival in pediatric brain tumors.

Authors:  James T Grist; Stephanie Withey; Christopher Bennett; Heather E L Rose; Lesley MacPherson; Adam Oates; Stephen Powell; Jan Novak; Laurence Abernethy; Barry Pizer; Simon Bailey; Steven C Clifford; Dipayan Mitra; Theodoros N Arvanitis; Dorothee P Auer; Shivaram Avula; Richard Grundy; Andrew C Peet
Journal:  Sci Rep       Date:  2021-09-23       Impact factor: 4.379

Review 8.  Advanced Neuroimaging Approaches to Pediatric Brain Tumors.

Authors:  Rahul M Nikam; Xuyi Yue; Gurcharanjeet Kaur; Vinay Kandula; Abdulhafeez Khair; Heidi H Kecskemethy; Lauren W Averill; Sigrid A Langhans
Journal:  Cancers (Basel)       Date:  2022-07-13       Impact factor: 6.575

  8 in total

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