Literature DB >> 33540854

Prenatal Exome Sequencing: Background, Current Practice and Future Perspectives-A Systematic Review.

Daniele Guadagnolo1, Gioia Mastromoro1, Francesca Di Palma1, Antonio Pizzuti1,2, Enrica Marchionni1.   

Abstract

The introduction of Next Generation Sequencing (NGS) technologies has exerted a significant impact on prenatal diagnosis. Prenatal Exome Sequencing (pES) is performed with increasing frequency in fetuses with structural anomalies and negative chromosomal analysis. The actual diagnostic value varies extensively, and the role of incidental/secondary or inconclusive findings and negative results has not been fully ascertained. We performed a systematic literature review to evaluate the diagnostic yield, as well as inconclusive and negative-result rates of pES. Papers were divided in two groups. The former includes fetuses presenting structural anomalies, regardless the involved organ; the latter focuses on specific class anomalies. Available findings on non-informative or negative results were gathered as well. In the first group, the weighted average diagnostic yield resulted 19%, and inconclusive finding rate 12%. In the second group, the percentages were extremely variable due to differences in sample sizes and inclusion criteria, which constitute major determinants of pES efficiency. Diagnostic pES availability and its application have a pivotal role in prenatal diagnosis, though more homogeneity in access criteria and a consensus on clinical management of controversial information management is envisageable to reach widespread use in the near future.

Entities:  

Keywords:  ES; NGS; pES; prenatal diagnosis; prenatal exome sequencing; systematic review

Year:  2021        PMID: 33540854      PMCID: PMC7913004          DOI: 10.3390/diagnostics11020224

Source DB:  PubMed          Journal:  Diagnostics (Basel)        ISSN: 2075-4418


  104 in total

1.  Reproductive genetic counseling challenges associated with diagnostic exome sequencing in a large academic private reproductive genetic counseling practice.

Authors:  Lauren E Westerfield; Samantha R Stover; Veena S Mathur; Salma A Nassef; Tiffiney G Carter; Yaping Yang; Christine M Eng; Ignatia B Van den Veyver
Journal:  Prenat Diagn       Date:  2015-09-04       Impact factor: 3.050

Review 2.  Clinical utility of exome sequencing in the prenatal diagnosis of congenital anomalies: A Review.

Authors:  Fionnuala Mone; Elizabeth Quinlan-Jones; Mark D Kilby
Journal:  Eur J Obstet Gynecol Reprod Biol       Date:  2018-10-06       Impact factor: 2.435

3.  Whole-exome sequencing in the evaluation of fetal structural anomalies: a prospective cohort study.

Authors:  Slavé Petrovski; Vimla Aggarwal; Jessica L Giordano; Melissa Stosic; Karen Wou; Louise Bier; Erica Spiegel; Kelly Brennan; Nicholas Stong; Vaidehi Jobanputra; Zhong Ren; Xiaolin Zhu; Caroline Mebane; Odelia Nahum; Quanli Wang; Sitharthan Kamalakaran; Colin Malone; Kwame Anyane-Yeboa; Russell Miller; Brynn Levy; David B Goldstein; Ronald J Wapner
Journal:  Lancet       Date:  2019-01-31       Impact factor: 79.321

4.  Clinical diagnosis by whole-genome sequencing of a prenatal sample.

Authors:  Michael E Talkowski; Zehra Ordulu; Vamsee Pillalamarri; Carol B Benson; Ian Blumenthal; Susan Connolly; Carrie Hanscom; Naveed Hussain; Shahrin Pereira; Jonathan Picker; Jill A Rosenfeld; Lisa G Shaffer; Louise E Wilkins-Haug; James F Gusella; Cynthia C Morton
Journal:  N Engl J Med       Date:  2012-12-06       Impact factor: 91.245

5.  The use of fetal exome sequencing in prenatal diagnosis: a points to consider document of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Kristin G Monaghan; Natalia T Leach; Dawn Pekarek; Priya Prasad; Nancy C Rose
Journal:  Genet Med       Date:  2020-01-08       Impact factor: 8.822

6.  Advances in the prenatal diagnosis of monogenic disorders.

Authors:  Lyn S Chitty
Journal:  Prenat Diagn       Date:  2018-01       Impact factor: 3.050

Review 7.  Next-generation sequencing and the impact on prenatal diagnosis.

Authors:  Rhiannon Mellis; Natalie Chandler; Lyn S Chitty
Journal:  Expert Rev Mol Diagn       Date:  2018-07-18       Impact factor: 5.225

8.  COngenital heart disease and the Diagnostic yield with Exome sequencing (CODE) study: prospective cohort study and systematic review.

Authors:  F Mone; R Y Eberhardt; R K Morris; M E Hurles; D J McMullan; E R Maher; J Lord; L S Chitty; J L Giordano; R J Wapner; M D Kilby
Journal:  Ultrasound Obstet Gynecol       Date:  2020-12-03       Impact factor: 7.299

Review 9.  Exome Sequencing in Fetuses with Structural Malformations.

Authors:  Fiona L Mackie; Keren J Carss; Sarah C Hillman; Matthew E Hurles; Mark D Kilby
Journal:  J Clin Med       Date:  2014-07-08       Impact factor: 4.241

10.  Prenatal exome sequencing in anomalous fetuses: new opportunities and challenges.

Authors:  Neeta L Vora; Bradford Powell; Alicia Brandt; Natasha Strande; Emily Hardisty; Kelly Gilmore; Ann Katherine M Foreman; Kirk Wilhelmsen; Chris Bizon; Jason Reilly; Phil Owen; Cynthia M Powell; Debra Skinner; Christine Rini; Anne D Lyerly; Kim A Boggess; Karen Weck; Jonathan S Berg; James P Evans
Journal:  Genet Med       Date:  2017-05-18       Impact factor: 8.822

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  4 in total

Review 1.  Chromosomal Microarray Analysis in Fetuses Detected with Isolated Cardiovascular Malformation: A Multicenter Study, Systematic Review of the Literature and Meta-Analysis.

Authors:  Gioia Mastromoro; Nader Khaleghi Hashemian; Daniele Guadagnolo; Maria Grazia Giuffrida; Barbara Torres; Laura Bernardini; Flavia Ventriglia; Gerardo Piacentini; Antonio Pizzuti
Journal:  Diagnostics (Basel)       Date:  2022-05-27

2.  Diagnostic yield of exome sequencing for prenatal diagnosis of fetal structural anomalies: A systematic review and meta-analysis.

Authors:  Rhiannon Mellis; Kathryn Oprych; Elizabeth Scotchman; Melissa Hill; Lyn S Chitty
Journal:  Prenat Diagn       Date:  2022-05-07       Impact factor: 3.242

3.  Exome sequencing as first-tier test for fetuses with severe central nervous system structural anomalies.

Authors:  Y Yaron; V Ofen Glassner; A Mory; N Zunz Henig; A Kurolap; A Bar Shira; D Brabbing Goldstein; D Marom; L Ben Sira; H Baris Feldman; G Malinger; K Krajden Haratz; A Reches
Journal:  Ultrasound Obstet Gynecol       Date:  2022-07       Impact factor: 8.678

Review 4.  Molecular Approaches in Fetal Malformations, Dynamic Anomalies and Soft Markers: Diagnostic Rates and Challenges-Systematic Review of the Literature and Meta-Analysis.

Authors:  Gioia Mastromoro; Daniele Guadagnolo; Nader Khaleghi Hashemian; Enrica Marchionni; Alice Traversa; Antonio Pizzuti
Journal:  Diagnostics (Basel)       Date:  2022-02-23
  4 in total

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