Literature DB >> 33539885

DNA mechanics and its biological impact.

Aakash Basu1, Dmitriy G Bobrovnikov2, Taekjip Ha3.   

Abstract

Almost all nucleoprotein interactions and DNA manipulation events involve mechanical deformations of DNA. Extraordinary progresses in single-molecule, structural, and computational methods have characterized the average mechanical properties of DNA, such as bendability and torsional rigidity, in high resolution. Further, the advent of sequencing technology has permitted measuring, in high-throughput, how such mechanical properties vary with sequence and epigenetic modifications along genomes. We review these recent technological advancements, and discuss how they have contributed to the emerging idea that variations in the mechanical properties of DNA play a fundamental role in regulating, genome-wide, diverse processes involved in chromatin organization.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA physics; chromatin biophysics; genomics; mechanobiology of DNA; singlemolecule biophysics

Year:  2021        PMID: 33539885     DOI: 10.1016/j.jmb.2021.166861

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  5 in total

1.  DNAcycP: a deep learning tool for DNA cyclizability prediction.

Authors:  Keren Li; Matthew Carroll; Reza Vafabakhsh; Xiaozhong A Wang; Ji-Ping Wang
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

2.  Genesis of Open States Zones in a DNA Molecule Depends on the Localization and Value of the Torque.

Authors:  Stepan Dzhimak; Alexandr Svidlov; Anna Elkina; Eugeny Gerasimenko; Mikhail Baryshev; Mikhail Drobotenko
Journal:  Int J Mol Sci       Date:  2022-04-17       Impact factor: 6.208

3.  Cytosine methylation regulates DNA bendability depending on the curvature.

Authors:  Sanghun Yeou; Jihee Hwang; Jaehun Yi; Cheolhee Kim; Seong Keun Kim; Nam Ki Lee
Journal:  Chem Sci       Date:  2022-06-02       Impact factor: 9.969

4.  DNA Bending Force Facilitates Z-DNA Formation under Physiological Salt Conditions.

Authors:  Jaehun Yi; Sanghun Yeou; Nam Ki Lee
Journal:  J Am Chem Soc       Date:  2022-07-15       Impact factor: 16.383

Review 5.  Single-Molecule Methods for Investigating the Double-Stranded DNA Bendability.

Authors:  Sanghun Yeou; Nam Ki Lee
Journal:  Mol Cells       Date:  2022-01-31       Impact factor: 5.034

  5 in total

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