Literature DB >> 33537371

Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil.

Ardha Apriyanto1,2, Van Basten Tambunan1.   

Abstract

Elaeidobius kamerunicus Faust. (Coleoptera: Curculionidae) is an essential insect pollinator in oil palm plantations. Recently, researches have been undertaken to improve pollination efficiency using this species. A fundamental understanding of the genes related to this pollinator behavior is necessary to achieve this goal. Here, we present the draft genome sequence, annotation, and simple sequence repeat (SSR) marker data for this pollinator. In total, 34.97 Gb of sequence data from one male individual (monoisolate) were obtained using Illumina short-read platform NextSeq 500. The draft genome assembly was found to be 269.79 Mb and about 59.9% of completeness based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment. Functional gene annotation predicted about 26.566 genes. Also, a total of 281.668 putative SSR markers were identified. This draft genome sequence is a valuable resource for understanding the population genetics, phylogenetics, dispersal patterns, and behavior of this species.
© 2021 PT Astra Agro Lestari Tbk. Published by Elsevier Inc.

Entities:  

Keywords:  Curculionidae; Genomics; NGS; Oil Palm; Pollinator; Simple Sequence Repeat; Weevil; Whole-genome sequencing

Year:  2021        PMID: 33537371      PMCID: PMC7843393          DOI: 10.1016/j.dib.2021.106745

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


  2 in total

1.  The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont.

Authors:  Kristina K Gagalova; Justin G A Whitehill; Luka Culibrk; Diana Lin; Véronique Lévesque-Tremblay; Christopher I Keeling; Lauren Coombe; Macaire M S Yuen; Inanç Birol; Jörg Bohlmann; Steven J M Jones
Journal:  G3 (Bethesda)       Date:  2022-04-04       Impact factor: 3.154

2.  Microsatellite Variation in the Most Devastating Beetle Pests (Coleoptera: Curculionidae) of Agricultural and Forest Crops.

Authors:  Manee M Manee; Badr M Al-Shomrani; Musaad A Altammami; Hamadttu A F El-Shafie; Atheer A Alsayah; Fahad M Alhoshani; Fahad H Alqahtani
Journal:  Int J Mol Sci       Date:  2022-08-30       Impact factor: 6.208

  2 in total

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