Literature DB >> 33536424

Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.

Yong-Fei Wang1, Yan Zhang2, Zhiming Lin3, Huoru Zhang1, Ting-You Wang1,4, Yujie Cao1, David L Morris5, Yujun Sheng6, Xianyong Yin6, Shi-Long Zhong7, Xiaoqiong Gu8, Yao Lei1, Jing He2, Qi Wu2, Jiangshan Jane Shen1, Jing Yang1, Tai-Hing Lam9, Jia-Huang Lin9, Zhi-Ming Mai9,10, Mengbiao Guo1, Yuanjia Tang11, Yanhui Chen12, Qin Song13, Bo Ban14, Chi Chiu Mok15, Yong Cui16, Liangjing Lu11, Nan Shen11, Pak C Sham17, Chak Sing Lau18, David K Smith9, Timothy J Vyse5, Xuejun Zhang6, Yu Lung Lau19, Wanling Yang20,21.   

Abstract

Systemic lupus erythematosus (SLE), a worldwide autoimmune disease with high heritability, shows differences in prevalence, severity and age of onset among different ancestral groups. Previous genetic studies have focused more on European populations, which appear to be the least affected. Consequently, the genetic variations that underlie the commonalities, differences and treatment options in SLE among ancestral groups have not been well elucidated. To address this, we undertake a genome-wide association study, increasing the sample size of Chinese populations to the level of existing European studies. Thirty-eight novel SLE-associated loci and incomplete sharing of genetic architecture are identified. In addition to the human leukocyte antigen (HLA) region, nine disease loci show clear ancestral differences and implicate antibody production as a potential mechanism for differences in disease manifestation. Polygenic risk scores perform significantly better when trained on ancestry-matched data sets. These analyses help to reveal the genetic basis for disparities in SLE among ancestral groups.

Entities:  

Year:  2021        PMID: 33536424     DOI: 10.1038/s41467-021-21049-y

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  67 in total

1.  Trends in the incidence, demographics, and outcomes of end-stage renal disease due to lupus nephritis in the US from 1995 to 2006.

Authors:  Karen H Costenbader; Amrita Desai; Graciela S Alarcón; Linda T Hiraki; Tamara Shaykevich; M Alan Brookhart; Elena Massarotti; Bing Lu; Daniel H Solomon; Wolfgang C Winkelmayer
Journal:  Arthritis Rheum       Date:  2011-06

Review 2.  Epidemiology of systemic lupus erythematosus: a comparison of worldwide disease burden.

Authors:  N Danchenko; J A Satia; M S Anthony
Journal:  Lupus       Date:  2006       Impact factor: 2.911

3.  The discovery and development of belimumab: the anti-BLyS-lupus connection.

Authors:  William Stohl; David M Hilbert
Journal:  Nat Biotechnol       Date:  2012-01-09       Impact factor: 54.908

4.  Systemic lupus erythematosus: a genetic epidemiology study of 695 patients from China.

Authors:  J Wang; S Yang; J J Chen; S M Zhou; S M He; Y H Liang; W Meng; X F Yan; J J Liu; D Q Ye; X J Zhang
Journal:  Arch Dermatol Res       Date:  2007-03       Impact factor: 3.017

5.  Familial Aggregation of Systemic Lupus Erythematosus and Coaggregation of Autoimmune Diseases in Affected Families.

Authors:  Chang-Fu Kuo; Matthew J Grainge; Ana M Valdes; Lai-Chu See; Shue-Fen Luo; Kuang-Hui Yu; Weiya Zhang; Michael Doherty
Journal:  JAMA Intern Med       Date:  2015-09       Impact factor: 21.873

6.  Clinical features of systemic lupus erythematosus: differences related to race and age of onset.

Authors:  S P Ballou; M A Khan; I Kushner
Journal:  Arthritis Rheum       Date:  1982-01

7.  The prevalence and incidence of systemic lupus erythematosus in Birmingham, England. Relationship to ethnicity and country of birth.

Authors:  A E Johnson; C Gordon; R G Palmer; P A Bacon
Journal:  Arthritis Rheum       Date:  1995-04

8.  A family survey of lupus erythematosus. 1. Heritability.

Authors:  J S Lawrence; C L Martins; G L Drake
Journal:  J Rheumatol       Date:  1987-10       Impact factor: 4.666

9.  Transancestral mapping and genetic load in systemic lupus erythematosus.

Authors:  Carl D Langefeld; Hannah C Ainsworth; Deborah S Cunninghame Graham; Jennifer A Kelly; Mary E Comeau; Miranda C Marion; Timothy D Howard; Paula S Ramos; Jennifer A Croker; David L Morris; Johanna K Sandling; Jonas Carlsson Almlöf; Eduardo M Acevedo-Vásquez; Graciela S Alarcón; Alejandra M Babini; Vicente Baca; Anders A Bengtsson; Guillermo A Berbotto; Marc Bijl; Elizabeth E Brown; Hermine I Brunner; Mario H Cardiel; Luis Catoggio; Ricard Cervera; Jorge M Cucho-Venegas; Solbritt Rantapää Dahlqvist; Sandra D'Alfonso; Berta Martins Da Silva; Iñigo de la Rúa Figueroa; Andrea Doria; Jeffrey C Edberg; Emőke Endreffy; Jorge A Esquivel-Valerio; Paul R Fortin; Barry I Freedman; Johan Frostegård; Mercedes A García; Ignacio García de la Torre; Gary S Gilkeson; Dafna D Gladman; Iva Gunnarsson; Joel M Guthridge; Jennifer L Huggins; Judith A James; Cees G M Kallenberg; Diane L Kamen; David R Karp; Kenneth M Kaufman; Leah C Kottyan; László Kovács; Helle Laustrup; Bernard R Lauwerys; Quan-Zhen Li; Marco A Maradiaga-Ceceña; Javier Martín; Joseph M McCune; David R McWilliams; Joan T Merrill; Pedro Miranda; José F Moctezuma; Swapan K Nath; Timothy B Niewold; Lorena Orozco; Norberto Ortego-Centeno; Michelle Petri; Christian A Pineau; Bernardo A Pons-Estel; Janet Pope; Prithvi Raj; Rosalind Ramsey-Goldman; John D Reveille; Laurie P Russell; José M Sabio; Carlos A Aguilar-Salinas; Hugo R Scherbarth; Raffaella Scorza; Michael F Seldin; Christopher Sjöwall; Elisabet Svenungsson; Susan D Thompson; Sergio M A Toloza; Lennart Truedsson; Teresa Tusié-Luna; Carlos Vasconcelos; Luis M Vilá; Daniel J Wallace; Michael H Weisman; Joan E Wither; Tushar Bhangale; Jorge R Oksenberg; John D Rioux; Peter K Gregersen; Ann-Christine Syvänen; Lars Rönnblom; Lindsey A Criswell; Chaim O Jacob; Kathy L Sivils; Betty P Tsao; Laura E Schanberg; Timothy W Behrens; Earl D Silverman; Marta E Alarcón-Riquelme; Robert P Kimberly; John B Harley; Edward K Wakeland; Robert R Graham; Patrick M Gaffney; Timothy J Vyse
Journal:  Nat Commun       Date:  2017-07-17       Impact factor: 14.919

10.  Efficacy and Safety of Subcutaneous Belimumab in Systemic Lupus Erythematosus: A Fifty-Two-Week Randomized, Double-Blind, Placebo-Controlled Study.

Authors:  William Stohl; Andreas Schwarting; Masato Okada; Morton Scheinberg; Andrea Doria; Anne E Hammer; Christi Kleoudis; James Groark; Damon Bass; Norma Lynn Fox; David Roth; David Gordon
Journal:  Arthritis Rheumatol       Date:  2017-04-07       Impact factor: 10.995

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  30 in total

Review 1.  Recent advances in understanding the genetic basis of systemic lupus erythematosus.

Authors:  Eunji Ha; Sang-Cheol Bae; Kwangwoo Kim
Journal:  Semin Immunopathol       Date:  2021-11-03       Impact factor: 9.623

Review 2.  Emerging concepts of type I interferons in SLE pathogenesis and therapy.

Authors:  Antonios Psarras; Miriam Wittmann; Edward M Vital
Journal:  Nat Rev Rheumatol       Date:  2022-09-12       Impact factor: 32.286

Review 3.  Construction and Application of Polygenic Risk Scores in Autoimmune Diseases.

Authors:  Chachrit Khunsriraksakul; Havell Markus; Nancy J Olsen; Laura Carrel; Bibo Jiang; Dajiang J Liu
Journal:  Front Immunol       Date:  2022-06-27       Impact factor: 8.786

4.  Systematic identification of genomic elements that regulate FCGR2A expression and harbor variants linked with autoimmune disease.

Authors:  Johanna Dahlqvist; Charles P Fulco; John P Ray; Thomas Liechti; Carl G de Boer; David J Lieb; Thomas M Eisenhaure; Jesse M Engreitz; Mario Roederer; Nir Hacohen
Journal:  Hum Mol Genet       Date:  2022-06-22       Impact factor: 5.121

5.  Evolution of immune genes is associated with the Black Death.

Authors:  Jennifer Klunk; Tauras P Vilgalys; Christian E Demeure; Xiaoheng Cheng; Mari Shiratori; Julien Madej; Rémi Beau; Derek Elli; Maria I Patino; Rebecca Redfern; Sharon N DeWitte; Julia A Gamble; Jesper L Boldsen; Ann Carmichael; Nükhet Varlik; Katherine Eaton; Jean-Christophe Grenier; G Brian Golding; Alison Devault; Jean-Marie Rouillard; Vania Yotova; Renata Sindeaux; Chun Jimmie Ye; Matin Bikaran; Anne Dumaine; Jessica F Brinkworth; Dominique Missiakas; Guy A Rouleau; Matthias Steinrücken; Javier Pizarro-Cerdá; Hendrik N Poinar; Luis B Barreiro
Journal:  Nature       Date:  2022-10-19       Impact factor: 69.504

6.  snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets.

Authors:  Niccolo Tesi; Sven van der Lee; Marc Hulsman; Henne Holstege; Marcel J T Reinders
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

7.  Biological impact of iberdomide in patients with active systemic lupus erythematosus.

Authors:  Peter E Lipsky; Ronald van Vollenhoven; Thomas Dörner; Victoria P Werth; Joan T Merrill; Richard Furie; Milan Petronijevic; Benito Velasco Zamora; Maria Majdan; Fedra Irazoque-Palazuelos; Robert Terbrueggen; Nikolay Delev; Michael Weiswasser; Shimon Korish; Mark Stern; Sarah Hersey; Ying Ye; Allison Gaudy; Zhaohui Liu; Robert Gagnon; Shaojun Tang; Peter H Schafer
Journal:  Ann Rheum Dis       Date:  2022-04-27       Impact factor: 27.973

8.  Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data.

Authors:  Jennifer R S Meadows; Jan Komorowski; Sara A Yones; Alva Annett; Patricia Stoll; Klev Diamanti; Linda Holmfeldt; Carl Fredrik Barrenäs
Journal:  Sci Rep       Date:  2022-05-06       Impact factor: 4.996

9.  Immunogenetic Relationship of HLA-G 14 bp Insertion/Deletion Polymorphism and Toll-Like Receptor 9 with Systemic Lupus Erythematosus in Egyptian Patients: A Case-Control Study.

Authors:  Shrouk A Mohammed; Laila M Al Kady; Ghada S Boghdadi; Ghada A Dawa; Marian A Gerges; Maher A El Shafai
Journal:  Int J Gen Med       Date:  2022-01-18

10.  Mergeomics 2.0: a web server for multi-omics data integration to elucidate disease networks and predict therapeutics.

Authors:  Jessica Ding; Montgomery Blencowe; Thien Nghiem; Sung-Min Ha; Yen-Wei Chen; Gaoyan Li; Xia Yang
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

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