| Literature DB >> 33536359 |
Soo Yeon Kim1, Chang Ho Shin2, Young Ah Lee3, Choong Ho Shin3, Sei Won Yang3, Tae-Joon Cho2, Jung Min Ko4.
Abstract
BACKGROUND: Silver-Russell syndrome (SRS) is a pre- or post-natal growth retardation disorder caused by (epi)genetic alterations. We evaluated the molecular basis and clinical value of sequential epigenetic analysis in pediatric patients with SRS.Entities:
Keywords: Bisulfite pyrosequencing; Epigenetic analysis; Methylation defects; Netchine-Harbison clinical scoring system (NH-CSS); Silver-Russell syndrome
Mesh:
Year: 2021 PMID: 33536359 PMCID: PMC7884196 DOI: 10.3343/alm.2021.41.4.401
Source DB: PubMed Journal: Ann Lab Med ISSN: 2234-3806 Impact factor: 3.464
Primers used for bisulfite pyrosequencing
| Gene | Gene location (chromosome) | Forward primer (5' to 3') | Reverse primer (5' to 3') | Sequencing primer (5' to 3') |
|---|---|---|---|---|
| IC1 ( | 11p15.5 | TGAGTGTTTTATTTTTAGATGATTTT | GTTGTGATGTGTGAGTTTGTATTGT | GTGGTTTGGGTGATT |
| IC2 ( | 11p15.5 | GTGATGTGTTTATTATT | TGGAGGTTTGTGGGYGTTTAG | GTGATGTGTTTATTATT |
| 7q32.2 | AGGGGAGGGTTTTTGTAGTAGAAT | ACCACAAAAATAAAATACCCCTCT | AGGGTTTTTGTAGTAGAATT | |
| 14q32.2 | GTAGTAAAGAAGGGAGGAAAAAATT | CCCCCACACATTATACCTAAATTC | GTGTTTTTGGTAGTTATGATTAATA |
Abbreviations: IC1, imprinting center 1; IC2, imprinting center 2.
Growth parameters, major clinical characteristics, and results of the (epi)genetic analyses of all patients
| No. case | Gender | Gestation (weeks, days) | Birth weight (SDS) | MPH (SDS) | Last follow-up visit | Clinical manifestations | Molecular analysis | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Age (month) | GH Tx (months of duration) | Height (SDS) | Weight (SDS) | Key characteristics of SRS | Other characteristics | MS-MLPA for 11p15 | Bisulfite pyrosequencing[ | |||||||
| IC1 (%mC) | IC2 (%mC) | |||||||||||||
| 1 | Female | 39, 0 | −2.20 | −0.84 | 171 | 138 | −2.81 | −4.55 | PE, C, F | Normal | N | N | N | |
| 2 | Male | 39, 0 | −2.26 | 0.63 | 137 | 43 | −4.35 | −2.10 | TF, M, C | Normal | N | N | N | |
| 3 | Female | 40, 0 | −2.61 | 1.35 | 135 | 30 | 0.47 | 1.66 | M, C, LLD | IC1-LOM | L (33.6) | N | N | |
| 4 | Male | 39, 6 | −4.11 | −0.26 | 155 | 100 | −2.16 | −3.14 | TF, FB, M, C, LLD, F | SD, MD | IC1-LOM | L (14.0) | N | N |
| 5 | Female | 39, 0 | −2.48 | 1.46 | 63 | ND | −2.66 | −3.35 | M, C, LLD | Normal | N | N | N | |
| 6 | Male | 39, 0 | −2.09 | −0.08 | 9 | ND | −2.69 | −3.71 | TF, PE, FB, M, LLD | ASD, cryptorchidism, MD | IC1-LOM | L (27.8) | N | N |
| 7 | Female | 38, 0 | −2.69 | −0.83 | 120 | ND | −1.01 | −0.81 | LLD | Normal | L (40.5) | N | N | |
| 8 | Male | 38, 0 | −3.55 | −1.86 | 17 | ND | −4.15 | −5.35 | M, FB | MD | Normal | L (29.0) | N | N |
| 9 | Female | 39, 4 | −2.01 | −1.37 | 135 | 72 | −1.24 | −1.26 | TF, PE, FB, M, LLD | Normal | L (30.0) | N | N | |
| 10 | Female | 38, 3 | −2.19 | −1.15 | 152 | 38 | −2.55 | −1.50 | PE, M, C | Normal | N | N | H (96.7) | |
| 11 | Female | 37, 6 | −2.11 | −0.48 | 91 | 43 | −2.14 | −2.33 | TF, PE, FB, M | Normal | N | N | H (97.2) | |
| 12 | Male | 38, 0 | −2.65 | −0.26 | 51 | ND | −2.38 | −3.60 | FB, C | Normal | N | N | N | |
| 13 | Female | 37, 1 | −3.34 | 0.39 | 63 | 15 | −0.21 | −1.75 | C, LLD | SUA, SD | IC1-LOM | L (19.5) | N | N |
| 14 | Male | 40, 0 | −2.77 | −0.35 | 50 | 16 | −2.17 | −3.13 | TF, PE, FB, M | Normal | N | N | N | |
| 15 | Female | 32, 4 | −2.46 | 1.36 | 52 | ND | −2.56 | −3.33 | PE, FB | SUA | Normal | N | N | N |
| 16 | Female | 38, 4 | −3.25 | −1.21 | 68 | ND | −2.77 | −4.21 | TF, PE, FB, M, C, LLD | MD | IC1-LOM | L (33.2) | N | N |
| 17 | Male | 39, 0 | −2.87 | 0.54 | 83 | ND | −5.42 | −8.10 | F | Normal | N | N | N | |
| 18 | Male | 38, 4 | −2.35 | −0.26 | 18 | ND | −2.51 | −1.46 | M | Normal | N | N | N | |
| 19 | Male | 40, 4 | −4.18 | 0.89 | 25 | ND | −4.30 | −5.35 | TF, PE, FB, M, C, | MD | IC1-LOM | L (12.1) | N | N |
| LLD, F | ||||||||||||||
| 20 | Female | 38, 1 | −2.85 | 0.49 | 10 | ND | −2.79 | −4.00 | TF, FB, F | VSD | Normal | N | N | N |
| 21 | Female | 38, 2 | −2.55 | −1.58 | 75 | ND | −6.31 | −6.58 | TF, PE, FB, C, F | Normal | N | N | H (96.9) | |
| 22 | Male | 35, 0 | −1.70 | 0.00 | 24 | ND | −1.84 | −2.44 | TF, PE, FB, M, LLD | MD | IC1-LOM | L (34.9) | N | N |
| 23 | Male | 34, 0 | −2.50 | −0.63 | 8 | ND | −4.22 | −5.59 | C, LLD | MD | IC1-LOM | L (26.1) | N | N |
| 24 | Male | 40, 0 | −2.09 | 0.19 | 15 | ND | −1.64 | −0.84 | TF, FB, M, C | IC1-LOM | L (35.6) | N | N | |
| 25 | Male | 35, 3 | −2.65 | −0.17 | 14 | ND | −4.26 | −5.61 | FB, M, F | VSD, cryptorchidism, MD | Normal | N | N | N |
| 26 | Male | 33, 2 | −2.27 | 1.49 | 118 | 36 | −5.93 | −4.07 | TF, PE, C, LLD, F | MD | Normal | N | N | N |
| 27 | Female | 35, 2 | −2.77 | 0.78 | 13 | ND | −3.12 | −5.28 | M, F | Cleft palate, ASD | IC1-LOM | L (32.7) | N | N |
| 28 | Male | 32, 5 | −1.84 | −0.35 | 12 | ND | −2.80 | −2.90 | TF, PE, FB, M, LLD | cryptorchidism | IC1-LOM | L (20.1) | N | N |
*Reference values (%mC, –2 SD to +2 SD) are as follows: IC1 (49.1–59.7), IC2 (56.4–69.9), MEST (47.8–54.3). Abbreviations: SDS, standard deviation score; MPH, midparental height; GH, growth hormone; SRS, Silver–Russell syndrome; MS-MLPA, methylation-specific multiplex ligation-dependent probe amplification; LOM, loss of methylation; ND, not done; PE, prominent ears; C, clinodactyly on the 5th finger; F, feeding difficulty; IC1: imprinting center 1; TF, triangular face; M, relative macrocephaly; LLD, leg length discrepancy; FB, frontal bossing; SD, speech delay; MD, motor delay; L, low; N, normal; H, high; ASD, atrial septal defect; SUA, single umbilical artery; VSD, ventricular septal defect.
Comparisons of clinical characteristics between patients with and without an epigenetic variant
| Epigenetic variant (N = 17) | No epigenetic variant (N = 11) | ||
|---|---|---|---|
| Birth weight (average SDS) | −2.68 | −2.41 | 0.505 |
| Gestational age [weeks on average (range)] | 37.8 (32.7–40.6) | 37.5 (32.6–40) | 0.551 |
| NH-CSS criteria [N, (%)] | |||
| Small for gestational age | 15 (88.2) | 11 (100.0) | 0.505 |
| Postnatal growth retardation | 14 (82.4) | 11 (100.0) | 0.258 |
| Relative macrocephaly | 13 (72.2) | 5 (45.5) | 0.097 |
| Frontal bossing | 12 (64.7) | 5 (45.5) | 0.441 |
| Body asymmetry | 11 (64.7) | 2 (18.2) | 0.024[ |
| Feeding difficulties | 4 (23.5) | 5 (45.5) | 0.409 |
| Other manifestations [N, (%)] | |||
| Triangular face | 10 (58.8) | 4 (36.4) | 0.440 |
| Prominent ears | 9 (52.9) | 4 (36.4) | 0.460 |
| Clinodactyly on 5th fingers | 10 (58.8) | 4 (36.4) | 0.440 |
| Developmental delay [N, (%)] | 8 (47.1) | 2 (18.2) | 0.226 |
*Statistically significant at P<0.05.
Abbreviations: SDS, standard deviation score; NH-CSS, Netchine-Harbison clinical scoring system.
Fig. 1Height changes during recombinant human growth hormone (rhGH) treatment in 10 patients. The values after each patient number in parentheses indicate the tendency of standard deviation scores (SDS) of the height of the patient at the beginning and at the last point of rhGH treatment. Pt, patient.