Literature DB >> 3353222

Interactive molecular biology computing.

J M Pustell1.   

Abstract

It is clear that the selection of the best possible algorithm for a computer program is essential for the creation of a useful tool. After this first step is taken, however, the usefulness of such a program may be greatly enhanced or impeded by the way it is implemented. We illustrate this point by describing our implementation of the well known FASTP/FASTIN algorithm in an interactive software environment.

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Year:  1988        PMID： 3353222      PMCID： PMC338175          DOI： 10.1093/nar/16.5.1813

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  3 in total

1.  Rapid and sensitive protein similarity searches.

Authors:  D J Lipman; W R Pearson
Journal:  Science       Date:  1985-03-22       Impact factor: 47.728

2.  A convenient and adaptable microcomputer environment for DNA and protein sequence manipulation and analysis.

Authors:  J Pustell; F C Kafatos
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

3.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205
  3 in total
  14 in total

1.  Use of alternative polyadenylation sites for tissue-specific transcription of two angiotensin-converting enzyme mRNAs.

Authors:  T J Thekkumkara; W Livingston; R S Kumar; G C Sen
Journal:  Nucleic Acids Res       Date:  1992-02-25       Impact factor: 16.971

2.  The HoxC4 homeodomain protein mediates activation of the immunoglobulin heavy chain 3' hs1,2 enhancer in human B cells. Relevance to class switch DNA recombination.

Authors:  Edmund C Kim; Christopher R Edmonston; Xiaoping Wu; András Schaffer; Paolo Casali
Journal:  J Biol Chem       Date:  2004-07-13       Impact factor: 5.157

3.  Cloning and characterization of a sixth adenylyl cyclase isoform: types V and VI constitute a subgroup within the mammalian adenylyl cyclase family.

Authors:  S Katsushika; L Chen; J Kawabe; R Nilakantan; N J Halnon; C J Homcy; Y Ishikawa
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

4.  Isolation and functional expression of a mammalian prohormone processing enzyme, murine prohormone convertase 1.

Authors:  J Korner; J Chun; D Harter; R Axel
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-01       Impact factor: 11.205

5.  Prohormone processing in Xenopus oocytes: characterization of cleavage signals and cleavage enzymes.

Authors:  J Korner; J Chun; L O'Bryan; R Axel
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-15       Impact factor: 11.205

6.  DNA sequence and expression analysis of algP and algQ, components of the multigene system transcriptionally regulating mucoidy in Pseudomonas aeruginosa: algP contains multiple direct repeats.

Authors:  W M Konyecsni; V Deretic
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

7.  Sequencing of an upstream region of the human HLA-DRA gene containing X' and Y' boxes.

Authors:  G Feriotto; C Mischiati; N Bianchi; C Rutigliano; P Giacomini; R Gambari
Journal:  Nucleic Acids Res       Date:  1995-05-25       Impact factor: 16.971

8.  A procaryotic regulatory factor with a histone H1-like carboxy-terminal domain: clonal variation of repeats within algP, a gene involved in regulation of mucoidy in Pseudomonas aeruginosa.

Authors:  V Deretic; W M Konyecsni
Journal:  J Bacteriol       Date:  1990-10       Impact factor: 3.490

9.  Constitutive expression of the urokinase plasminogen activator gene in murine RAW264 macrophages involves distal and 5' non-coding sequences that are conserved between mouse and pig.

Authors:  A I Cassady; K J Stacey; K A Nimmo; K M Murphy; D von der Ahe; D Pearson; F M Botteri; Y Nagamine; D A Hume
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

10.  Characterization of the DNA polymerase gene of human herpesvirus 6.

Authors:  I A Teo; B E Griffin; M D Jones
Journal:  J Virol       Date:  1991-09       Impact factor: 5.103
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