Literature DB >> 33531530

A new framework for MR diffusion tensor distribution.

Kulam Najmudeen Magdoom1, Sinisa Pajevic1, Gasbarra Dario2, Peter J Basser3.   

Abstract

The ability to characterize heterogeneous and anisotropic water diffusion processes within macroscopic MRI voxels non-invasively and in vivo is a desideratum in biology, neuroscience, and medicine. While an MRI voxel may contain approximately a microliter of tissue, our goal is to examine intravoxel diffusion processes on the order of picoliters. Here we propose a new theoretical framework and efficient experimental design to describe and measure such intravoxel structural heterogeneity and anisotropy. We assume that a constrained normal tensor-variate distribution (CNTVD) describes the variability of positive definite diffusion tensors within a voxel which extends its applicability to a wide range of b-values while preserving the richness of diffusion tensor distribution (DTD) paradigm unlike existing models. We introduce a new Monte Carlo (MC) scheme to synthesize realistic 6D DTD numerical phantoms and invert the MR signal. We show that the signal inversion is well-posed and estimate the CNTVD parameters parsimoniously by exploiting the different symmetries of the mean and covariance tensors of CNTVD. The robustness of the estimation pipeline is assessed by adding noise to calculated MR signals and compared with the ground truth. A family of invariant parameters and glyphs which characterize microscopic shape, size and orientation heterogeneity within a voxel are also presented.

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Year:  2021        PMID: 33531530      PMCID: PMC7854653          DOI: 10.1038/s41598-021-81264-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.996


  47 in total

1.  Relationships between diffusion tensor and q-space MRI.

Authors:  Peter J Basser
Journal:  Magn Reson Med       Date:  2002-02       Impact factor: 4.668

2.  Diffusion time dependence of the apparent diffusion tensor in healthy human brain and white matter disease.

Authors:  C A Clark; M Hedehus; M E Moseley
Journal:  Magn Reson Med       Date:  2001-06       Impact factor: 4.668

3.  Equivalence of double and single wave vector diffusion contrast at low diffusion weighting.

Authors:  Sune Nørhøj Jespersen
Journal:  NMR Biomed       Date:  2011-12-02       Impact factor: 4.044

4.  Saturated Reconstruction of a Volume of Neocortex.

Authors:  Narayanan Kasthuri; Kenneth Jeffrey Hayworth; Daniel Raimund Berger; Richard Lee Schalek; José Angel Conchello; Seymour Knowles-Barley; Dongil Lee; Amelio Vázquez-Reina; Verena Kaynig; Thouis Raymond Jones; Mike Roberts; Josh Lyskowski Morgan; Juan Carlos Tapia; H Sebastian Seung; William Gray Roncal; Joshua Tzvi Vogelstein; Randal Burns; Daniel Lewis Sussman; Carey Eldin Priebe; Hanspeter Pfister; Jeff William Lichtman
Journal:  Cell       Date:  2015-07-30       Impact factor: 41.582

5.  Quantifying axon diameter and intra-cellular volume fraction in excised mouse spinal cord with q-space imaging.

Authors:  Henry H Ong; Felix W Wehrli
Journal:  Neuroimage       Date:  2010-03-27       Impact factor: 6.556

6.  Effects of nongaussian diffusion on "isotropic diffusion" measurements: An ex-vivo microimaging and simulation study.

Authors:  Sune Nørhøj Jespersen; Jonas Lynge Olesen; Andrada Ianuş; Noam Shemesh
Journal:  J Magn Reson       Date:  2019-01-21       Impact factor: 2.229

7.  Two-Dimensional Correlation of Isotropic and Directional Diffusion Using NMR.

Authors:  João P de Almeida Martins; Daniel Topgaard
Journal:  Phys Rev Lett       Date:  2016-02-23       Impact factor: 9.161

8.  ODF RECONSTRUCTION IN Q-BALL IMAGING WITH SOLID ANGLE CONSIDERATION.

Authors:  Iman Aganj; Christophe Lenglet; Guillermo Sapiro
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009 Jun-Jul

9.  Accuracy and precision of statistical descriptors obtained from multidimensional diffusion signal inversion algorithms.

Authors:  Alexis Reymbaut; Paolo Mezzani; João P de Almeida Martins; Daniel Topgaard
Journal:  NMR Biomed       Date:  2020-02-17       Impact factor: 4.044

10.  Estimation of the effective self-diffusion tensor from the NMR spin echo.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  J Magn Reson B       Date:  1994-03
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  3 in total

Review 1.  Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome.

Authors:  Susie Y Huang; Thomas Witzel; Boris Keil; Alina Scholz; Mathias Davids; Peter Dietz; Elmar Rummert; Rebecca Ramb; John E Kirsch; Anastasia Yendiki; Qiuyun Fan; Qiyuan Tian; Gabriel Ramos-Llordén; Hong-Hsi Lee; Aapo Nummenmaa; Berkin Bilgic; Kawin Setsompop; Fuyixue Wang; Alexandru V Avram; Michal Komlosh; Dan Benjamini; Kulam Najmudeen Magdoom; Sudhir Pathak; Walter Schneider; Dmitry S Novikov; Els Fieremans; Slimane Tounekti; Choukri Mekkaoui; Jean Augustinack; Daniel Berger; Alexander Shapson-Coe; Jeff Lichtman; Peter J Basser; Lawrence L Wald; Bruce R Rosen
Journal:  Neuroimage       Date:  2021-08-28       Impact factor: 7.400

Review 2.  Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact.

Authors:  Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller; Chantal M W Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; Chiara Maffei; Gabriel Ramos-Llordén; Aapo Nummenmaa; Thomas Witzel; Anastasia Yendiki; Yi-Qiao Song; Chu-Chung Huang; Ching-Po Lin; Nikolaus Weiskopf; Alfred Anwander; Derek K Jones; Bruce R Rosen; Lawrence L Wald; Susie Y Huang
Journal:  Neuroimage       Date:  2022-02-23       Impact factor: 7.400

3.  Whole-Brain Imaging of Subvoxel T1-Diffusion Correlation Spectra in Human Subjects.

Authors:  Alexandru V Avram; Joelle E Sarlls; Peter J Basser
Journal:  Front Neurosci       Date:  2021-06-11       Impact factor: 4.677

  3 in total

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