Literature DB >> 33529260

Clinical and whole genome characterization of SARS-CoV-2 in India.

Radhakrishna Muttineni1, Nagamani Kammili2, Thrilok Chander Bingi3, Raja Rao M3, Kalyani Putty4, Pankaj Singh Dholaniya5, Ravi Kumar Puli6, Sunitha Pakalapati2, Saritha S5, Shekar K1, Mallikarjuna Reddy Doodipala7, Amit A Upadhyay8, Steven E Bosinger9, Rama R Amara8, Anand K Kondapi5.   

Abstract

We report clinical profile of hundred and nine patients with SARS CoV-2 infection, and whole genome sequences (WGS) of seven virus isolates from the first reported cases in India, with various international travel histories. Comorbidities such as diabetes, hypertension, and cardiovascular disease were frequently associated with severity of the disease. WBC and neutrophil counts showed an increase, while lymphocyte counts decreased in patients with severe infection suggesting a possible neutrophil mediated organ damage, while immune activity may be diminished with decrease in lymphocytes leading to disease severity. Increase in SGOT, SGPT and blood urea suggests the functional deficiencies of liver, heart, and kidney in patients who succumbed to the disease when compared to the group of recovered patients. The WGS analysis showed that these isolates were classified into two clades: I/A3i, and A2a (four according to GISAID: O, L, GR, and GH). Further, WGS phylogeny and travel history together indicate possible transmission from Middle East and Europe. Three S protein variants: Wuhan reference, D614G, and Y28H were identified predicted to possess different binding affinities to host ACE2.

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Year:  2021        PMID: 33529260      PMCID: PMC7853523          DOI: 10.1371/journal.pone.0246173

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  48 in total

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3.  Genomic Surveillance and Phylodynamic Analyses Reveal the Emergence of Novel Mutations and Co-mutation Patterns Within SARS-CoV-2 Variants Prevalent in India.

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