Literature DB >> 33527165

Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis.

Ang Liu1, Hui Wang1, Yuan-Yuan Yang1, Qing-Jie Xue1, Xiu-Zhen Li2.   

Abstract

The genus Algibacter belongs to the family Flavobacteriaceae of the Bacteroidetes, and all members of this genus were isolated from marine environments. Among the Algibacter species, two members, Algibacter lectus KMM 3902T and Algibacter wandonensis WS-MY22T, were isolated from green algae and sediment around a brown algae respectively. The 16S rRNA gene sequences of these two type strains possess 99.4% sequence similarity. In this study, further studies were undertaken to clarify the taxonomic assignments of the two species. Whole-genome sequence analysis showed that the similarities for other phylogenetic markers are also very high (i.e. 99.9% for gyrB, 99.6% for recA and 99.9% for rpoD). Average nucleotide identity, average amino acids identity and digital DNA-DNA hybridization value between A. lectus KMM 3902T and A. wandonensis WS-MY22T are 98.3%, 98.6% and 89.4% respectively, all clearly exceed suggested species delineation thresholds. Furthermore, phylogenetic trees based on sequences of 16S rRNA gene and up-to-date bacterial core gene set (UBCG) consisting of 92 genes provided additional evidence that A. lectus KMM 3902T and A. wandonensis WS-MY22T are very closely related. In addition, a review of their profiles indicated that A. lectus KMM 3902T and A. wandonensis WS-MY22T did not present pronounced differences at phenotypic and chemotaxonomic levels. Based on these evidence, we propose that A. wandonensis should be reclassified as later heterotypic synonyms of A. lectus.

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Year:  2021        PMID: 33527165     DOI: 10.1007/s00284-021-02356-5

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  19 in total

1.  Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae.

Authors:  Olga I Nedashkovskaya; Seung Bum Kim; Suk Kyun Han; Moon-Soo Rhee; Anatoly M Lysenko; Manfred Rohde; Natalia V Zhukova; Galina M Frolova; Valery V Mikhailov; Kyung Sook Bae
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

2.  Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir.

Authors:  Jung-Hoon Yoon; Sooyeon Park
Journal:  Int J Syst Evol Microbiol       Date:  2013-08-30       Impact factor: 2.747

3.  Algibacter aquaticus sp. nov., a slightly alkaliphilic marine Flavobacterium isolated from coastal surface water.

Authors:  Shu-Kuan Wong; Sanghwa Park; Jung-Sook Lee; Keun Chul Lee; Yoshitoshi Ogura; Tetsuya Hayashi; Hiroshi Xavier Chiura; Susumu Yoshizawa; Koji Hamasaki
Journal:  Int J Syst Evol Microbiol       Date:  2017-07-12       Impact factor: 2.747

4.  Algibacter agarivorans sp. nov. and Algibacter agarilyticus sp. nov., isolated from seawater, reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter.

Authors:  Seong Chan Park; Yeoung Min Hwang; Ji Hee Lee; Keun Sik Baik; Chi Nam Seong
Journal:  Int J Syst Evol Microbiol       Date:  2013-03-29       Impact factor: 2.747

5.  Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera.

Authors:  Joseph S Wirth; William B Whitman
Journal:  Int J Syst Evol Microbiol       Date:  2018-05-29       Impact factor: 2.747

6.  Isolation and Complete Genome Sequence of Algibacter alginolytica sp. nov., a Novel Seaweed-Degrading Bacteroidetes Bacterium with Diverse Putative Polysaccharide Utilization Loci.

Authors:  Cong Sun; Ge-Yi Fu; Chong-Ya Zhang; Jing Hu; Lin Xu; Rui-Jun Wang; Yue Su; Shuai-Bo Han; Xiao-Yun Yu; Hong Cheng; Xin-Qi Zhang; Ying-Yi Huo; Xue-Wei Xu; Min Wu
Journal:  Appl Environ Microbiol       Date:  2016-05-02       Impact factor: 4.792

7.  Algibacter amylolyticus sp. nov., isolated from intertidal sediment.

Authors:  De-Chao Zhang; Jiang Wu; Kathrin Neuner; Jianting Yao; Rosa Margesin
Journal:  Int J Syst Evol Microbiol       Date:  2015-02-23       Impact factor: 2.747

8.  Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter.

Authors:  Olga I Nedashkovskaya; Marc Vancanneyt; Seung Bum Kim; Bart Hoste; Kyung Sook Bae
Journal:  Int J Syst Evol Microbiol       Date:  2007-09       Impact factor: 2.747

9.  Algibacter pacificus sp. nov., isolated from a deep-sea seamount.

Authors:  Jie Liu; Sheng-Dong Cai; Yu-Jing Wang; Qian Wang; De-Chao Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2020-04-03       Impact factor: 2.747

10.  Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov.

Authors:  Seong Chan Park; Yeoung Min Hwang; Han Na Choe; Keun Sik Baik; Hyangmi Kim; Chi Nam Seong
Journal:  Int J Syst Evol Microbiol       Date:  2012-10-05       Impact factor: 2.747

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  1 in total

1.  Whole Genome Sequencing and Biological Characteristics of Two Strains of Porcine Escherichia coli Isolated from Saba Pigs.

Authors:  Bo Zhang; Weiwei Zhao; Bin Gao; Chunlan Shan; Xi Wang; Quan Wan; Jing Deng; Jinglong Cha; Bingxun Chen; Dongmei Han; Libo Gao; Pingxing Ao; Ru Zhao; Peng Xiao; Longbao Lv; Hong Gao
Journal:  Curr Microbiol       Date:  2022-05-05       Impact factor: 2.188

  1 in total

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