Literature DB >> 33526945

Initialization is critical for preserving global data structure in both t-SNE and UMAP.

Dmitry Kobak1, George C Linderman2.   

Abstract

Entities:  

Year:  2021        PMID: 33526945     DOI: 10.1038/s41587-020-00809-z

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  24 in total

1.  CellRank for directed single-cell fate mapping.

Authors:  Marius Lange; Volker Bergen; Michal Klein; Manu Setty; Bernhard Reuter; Mostafa Bakhti; Heiko Lickert; Meshal Ansari; Janine Schniering; Herbert B Schiller; Dana Pe'er; Fabian J Theis
Journal:  Nat Methods       Date:  2022-01-13       Impact factor: 28.547

2.  LDLE: Low Distortion Local Eigenmaps.

Authors:  Dhruv Kohli; Alexander Cloninger; Gal Mishne
Journal:  J Mach Learn Res       Date:  2021 Jan-Dec       Impact factor: 5.177

3.  Cellular recovery after prolonged warm ischaemia of the whole body.

Authors:  David Andrijevic; Zvonimir Vrselja; Taras Lysyy; Shupei Zhang; Mario Skarica; Ana Spajic; David Dellal; Stephanie L Thorn; Robert B Duckrow; Shaojie Ma; Phan Q Duy; Atagun U Isiktas; Dan Liang; Mingfeng Li; Suel-Kee Kim; Stefano G Daniele; Khadija Banu; Sudhir Perincheri; Madhav C Menon; Anita Huttner; Kevin N Sheth; Kevin T Gobeske; Gregory T Tietjen; Hitten P Zaveri; Stephen R Latham; Albert J Sinusas; Nenad Sestan
Journal:  Nature       Date:  2022-08-03       Impact factor: 69.504

4.  Shared Differential Expression-Based Distance Reflects Global Cell Type Relationships in Single-Cell RNA Sequencing Data.

Authors:  Aidan Mcloughlin; Haiyan Huang
Journal:  J Comput Biol       Date:  2022-07-06       Impact factor: 1.549

5.  Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Authors:  Kurt G Schilling; François Rheault; Laurent Petit; Colin B Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi-Gomez; Marco Pizzolato; Mario Ocampo-Pineda; Simona Schiavi; Erick J Canales-Rodríguez; Alessandro Daducci; Cristina Granziera; Giorgio Innocenti; Jean-Philippe Thiran; Laura Mancini; Stephen Wastling; Sirio Cocozza; Maria Petracca; Giuseppe Pontillo; Matteo Mancini; Sjoerd B Vos; Vejay N Vakharia; John S Duncan; Helena Melero; Lidia Manzanedo; Emilio Sanz-Morales; Ángel Peña-Melián; Fernando Calamante; Arnaud Attyé; Ryan P Cabeen; Laura Korobova; Arthur W Toga; Anupa Ambili Vijayakumari; Drew Parker; Ragini Verma; Ahmed Radwan; Stefan Sunaert; Louise Emsell; Alberto De Luca; Alexander Leemans; Claude J Bajada; Hamied Haroon; Hojjatollah Azadbakht; Maxime Chamberland; Sila Genc; Chantal M W Tax; Ping-Hong Yeh; Rujirutana Srikanchana; Colin D Mcknight; Joseph Yuan-Mou Yang; Jian Chen; Claire E Kelly; Chun-Hung Yeh; Jerome Cochereau; Jerome J Maller; Thomas Welton; Fabien Almairac; Kiran K Seunarine; Chris A Clark; Fan Zhang; Nikos Makris; Alexandra Golby; Yogesh Rathi; Lauren J O'Donnell; Yihao Xia; Dogu Baran Aydogan; Yonggang Shi; Francisco Guerreiro Fernandes; Mathijs Raemaekers; Shaun Warrington; Stijn Michielse; Alonso Ramírez-Manzanares; Luis Concha; Ramón Aranda; Mariano Rivera Meraz; Garikoitz Lerma-Usabiaga; Lucas Roitman; Lucius S Fekonja; Navona Calarco; Michael Joseph; Hajer Nakua; Aristotle N Voineskos; Philippe Karan; Gabrielle Grenier; Jon Haitz Legarreta; Nagesh Adluru; Veena A Nair; Vivek Prabhakaran; Andrew L Alexander; Koji Kamagata; Yuya Saito; Wataru Uchida; Christina Andica; Masahiro Abe; Roza G Bayrak; Claudia A M Gandini Wheeler-Kingshott; Egidio D'Angelo; Fulvia Palesi; Giovanni Savini; Nicolò Rolandi; Pamela Guevara; Josselin Houenou; Narciso López-López; Jean-François Mangin; Cyril Poupon; Claudio Román; Andrea Vázquez; Chiara Maffei; Mavilde Arantes; José Paulo Andrade; Susana Maria Silva; Vince D Calhoun; Eduardo Caverzasi; Simone Sacco; Michael Lauricella; Franco Pestilli; Daniel Bullock; Yang Zhan; Edith Brignoni-Perez; Catherine Lebel; Jess E Reynolds; Igor Nestrasil; René Labounek; Christophe Lenglet; Amy Paulson; Stefania Aulicka; Sarah R Heilbronner; Katja Heuer; Bramsh Qamar Chandio; Javier Guaje; Wei Tang; Eleftherios Garyfallidis; Rajikha Raja; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Neuroimage       Date:  2021-08-22       Impact factor: 7.400

Review 6.  Breaking the Immune Complexity of the Tumor Microenvironment Using Single-Cell Technologies.

Authors:  Simone Caligola; Francesco De Sanctis; Stefania Canè; Stefano Ugel
Journal:  Front Genet       Date:  2022-05-16       Impact factor: 4.772

7.  Mapping circuit dynamics during function and dysfunction.

Authors:  Srinivas Gorur-Shandilya; Elizabeth M Cronin; Anna C Schneider; Sara Ann Haddad; Philipp Rosenbaum; Dirk Bucher; Farzan Nadim; Eve Marder
Journal:  Elife       Date:  2022-03-18       Impact factor: 8.713

8.  Unsupervised Learning Methods for Molecular Simulation Data.

Authors:  Aldo Glielmo; Brooke E Husic; Alex Rodriguez; Cecilia Clementi; Frank Noé; Alessandro Laio
Journal:  Chem Rev       Date:  2021-05-04       Impact factor: 60.622

Review 9.  Artificial Intelligence in Bulk and Single-Cell RNA-Sequencing Data to Foster Precision Oncology.

Authors:  Marco Del Giudice; Serena Peirone; Sarah Perrone; Francesca Priante; Fabiola Varese; Elisa Tirtei; Franca Fagioli; Matteo Cereda
Journal:  Int J Mol Sci       Date:  2021-04-27       Impact factor: 5.923

10.  AggMapNet: enhanced and explainable low-sample omics deep learning with feature-aggregated multi-channel networks.

Authors:  Wan Xiang Shen; Yu Liu; Yan Chen; Xian Zeng; Ying Tan; Yu Yang Jiang; Yu Zong Chen
Journal:  Nucleic Acids Res       Date:  2022-05-06       Impact factor: 19.160

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