Literature DB >> 33525595

The rDNA Loci-Intersections of Replication, Transcription, and Repair Pathways.

Ivana Goffová1,2, Jiří Fajkus1,2,3.   

Abstract

Genes encoding ribosomal RNA (rDNA) are essential for cell survival and are particularly sensitive to factors leading to genomic instability. Their repetitive character makes them prone to inappropriate recombinational events arising from collision of transcriptional and replication machineries, resulting in unstable rDNA copy numbers. In this review, we summarize current knowledge on the structure and organization of rDNA, its role in sensing changes in the genome, and its linkage to aging. We also review recent findings on the main factors involved in chromatin assembly and DNA repair in the maintenance of rDNA stability in the model plants Arabidopsis thaliana and the moss Physcomitrella patens, providing a view across the plant evolutionary tree.

Entities:  

Keywords:  CAF-1; RAD51; RTEL1; genome stability; rDNA organization; rRNA genes; ribosome

Year:  2021        PMID: 33525595      PMCID: PMC7865372          DOI: 10.3390/ijms22031302

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  102 in total

1.  Nucleotide sequence of the 5.8S and 25S rRNA genes and of the internal transcribed spacers from Arabidopsis thaliana.

Authors:  I Unfried; P Gruendler
Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

2.  Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction.

Authors:  Karolína Kolářová; Martina Nešpor Dadejová; Tomáš Loja; Gabriela Lochmanová; Eva Sýkorová; Martina Dvořáčková
Journal:  Plant J       Date:  2021-02-22       Impact factor: 6.417

3.  A new role of the rDNA and nucleolus in the nucleus--rDNA instability maintains genome integrity.

Authors:  Takehiko Kobayashi
Journal:  Bioessays       Date:  2008-03       Impact factor: 4.345

4.  Roles of RAD51 and RTEL1 in telomere and rDNA stability in Physcomitrella patens.

Authors:  Ivana Goffová; Radka Vágnerová; Vratislav Peška; Michal Franek; Kateřina Havlová; Marcela Holá; Dagmar Zachová; Miloslava Fojtová; Andrew Cuming; Yasuko Kamisugi; Karel J Angelis; Jiří Fajkus
Journal:  Plant J       Date:  2019-04-12       Impact factor: 6.417

5.  RTEL1 maintains genomic stability by suppressing homologous recombination.

Authors:  Louise J Barber; Jillian L Youds; Jordan D Ward; Michael J McIlwraith; Nigel J O'Neil; Mark I R Petalcorin; Julie S Martin; Spencer J Collis; Sharon B Cantor; Melissa Auclair; Heidi Tissenbaum; Stephen C West; Ann M Rose; Simon J Boulton
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

6.  Transcription-dependent recombination and the role of fork collision in yeast rDNA.

Authors:  Yasushi Takeuchi; Takashi Horiuchi; Takehiko Kobayashi
Journal:  Genes Dev       Date:  2003-06-03       Impact factor: 11.361

7.  The arrest of replication forks in the rDNA of yeast occurs independently of transcription.

Authors:  B J Brewer; D Lockshon; W L Fangman
Journal:  Cell       Date:  1992-10-16       Impact factor: 41.582

8.  Phenotypic reversion in fas mutants of Arabidopsis thaliana by reintroduction of FAS genes: variable recovery of telomeres with major spatial rearrangements and transcriptional reprogramming of 45S rDNA genes.

Authors:  Veronika Pavlištová; Martina Dvořáčková; Michal Jež; Iva Mozgová; Petr Mokroš; Jiří Fajkus
Journal:  Plant J       Date:  2016-10-18       Impact factor: 6.417

9.  The histone chaperones Nap1 and Vps75 bind histones H3 and H4 in a tetrameric conformation.

Authors:  Andrew Bowman; Richard Ward; Nicola Wiechens; Vijender Singh; Hassane El-Mkami; David George Norman; Tom Owen-Hughes
Journal:  Mol Cell       Date:  2011-02-18       Impact factor: 17.970

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  4 in total

1.  Karyotype variability in six Amazonian species of the family Curimatidae (Characiformes) revealed by repetitive sequence mapping.

Authors:  Juliana Nascimento Moraes; Patrik Ferreira Viana; Ramon Marin Favarato; Vanessa Susan Pinheiro-Figliuolo; Eliana Feldberg
Journal:  Genet Mol Biol       Date:  2022-06-27       Impact factor: 2.087

2.  A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae.

Authors:  Ziwei Wang; Mathieu Rouard; Manosh Kumar Biswas; Gaetan Droc; Dongli Cui; Nicolas Roux; Franc-Christophe Baurens; Xue-Jun Ge; Trude Schwarzacher; Pat J S Heslop-Harrison; Qing Liu
Journal:  Gigascience       Date:  2022-04-30       Impact factor: 7.658

3.  Changes in genotoxic stress response, ribogenesis and PAP (3'-phosphoadenosine 5'-phosphate) levels are associated with loss of desiccation tolerance in overprimed Medicago truncatula seeds.

Authors:  Andrea Pagano; Lorena Zannino; Paola Pagano; Enrico Doria; Daniele Dondi; Anca Macovei; Marco Biggiogera; Susana de Sousa Araújo; Alma Balestrazzi
Journal:  Plant Cell Environ       Date:  2022-03-08       Impact factor: 7.947

4.  The Chromosome Number and rDNA Loci Evolution in Onobrychis (Fabaceae).

Authors:  Gulru Yucel; Alexander Betekhtin; Evren Cabi; Metin Tuna; Robert Hasterok; Bozena Kolano
Journal:  Int J Mol Sci       Date:  2022-09-20       Impact factor: 6.208

  4 in total

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