Literature DB >> 33525365

Derivation and Application of Molecular Signatures to Prostate Cancer: Opportunities and Challenges.

Dimitrios Doultsinos1, Ian G Mills1,2.   

Abstract

Prostate cancer is a high-incidence cancer that requires improved patient stratification to ensure accurate predictions of risk and treatment response. Due to the significant contributions of transcription factors and epigenetic regulators to prostate cancer progression, there has been considerable progress made in developing gene signatures that may achieve this. Some of these are aligned to activities of key drivers such as the androgen receptor, whilst others are more agnostic. In this review, we present an overview of these signatures, the strategies for their derivation, and future perspectives on their continued development and evolution.

Entities:  

Keywords:  biobanking; biomarkers; chromatin; computational biology; epigenetics; prognostication; prostate cancer; signatures; stratification; transcription factors

Year:  2021        PMID: 33525365      PMCID: PMC7865812          DOI: 10.3390/cancers13030495

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  116 in total

1.  Androgen receptor functions as transcriptional repressor of cancer-associated fibroblast activation.

Authors:  Andrea Clocchiatti; Soumitra Ghosh; Maria-Giuseppina Procopio; Luigi Mazzeo; Pino Bordignon; Paola Ostano; Sandro Goruppi; Giulia Bottoni; Atul Katarkar; Mitchell Levesque; Peter Kölblinger; Reinhard Dummer; Victor Neel; Berna C Özdemir; G Paolo Dotto
Journal:  J Clin Invest       Date:  2018-11-05       Impact factor: 14.808

2.  Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer.

Authors:  Kasper Toustrup; Brita Singers Sørensen; Marianne Nordsmark; Morten Busk; Carsten Wiuf; Jan Alsner; Jens Overgaard
Journal:  Cancer Res       Date:  2011-08-16       Impact factor: 12.701

3.  SOX2 promotes lineage plasticity and antiandrogen resistance in TP53- and RB1-deficient prostate cancer.

Authors:  Ping Mu; Zeda Zhang; Matteo Benelli; Wouter R Karthaus; Elizabeth Hoover; Chi-Chao Chen; John Wongvipat; Sheng-Yu Ku; Dong Gao; Zhen Cao; Neel Shah; Elizabeth J Adams; Wassim Abida; Philip A Watson; Davide Prandi; Chun-Hao Huang; Elisa de Stanchina; Scott W Lowe; Leigh Ellis; Himisha Beltran; Mark A Rubin; David W Goodrich; Francesca Demichelis; Charles L Sawyers
Journal:  Science       Date:  2017-01-06       Impact factor: 47.728

4.  Transdifferentiation as a Mechanism of Treatment Resistance in a Mouse Model of Castration-Resistant Prostate Cancer.

Authors:  Min Zou; Roxanne Toivanen; Antonina Mitrofanova; Nicolas Floch; Sheida Hayati; Yanping Sun; Clémentine Le Magnen; Daniel Chester; Elahe A Mostaghel; Andrea Califano; Mark A Rubin; Michael M Shen; Cory Abate-Shen
Journal:  Cancer Discov       Date:  2017-04-14       Impact factor: 39.397

Review 5.  Androgen-regulated metabolism and biosynthesis in prostate cancer.

Authors:  Stefan J Barfeld; Harri M Itkonen; Alfonso Urbanucci; Ian G Mills
Journal:  Endocr Relat Cancer       Date:  2014-02-04       Impact factor: 5.678

6.  Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures.

Authors:  Anders E Berglund; Eric A Welsh; Steven A Eschrich
Journal:  Int J Genomics       Date:  2017-02-06       Impact factor: 2.326

7.  Activation of STING-Dependent Innate Immune Signaling By S-Phase-Specific DNA Damage in Breast Cancer.

Authors:  Eileen E Parkes; Steven M Walker; Laura E Taggart; Nuala McCabe; Laura A Knight; Richard Wilkinson; Karen D McCloskey; Niamh E Buckley; Kienan I Savage; Manuel Salto-Tellez; Stephen McQuaid; Mary T Harte; Paul B Mullan; D Paul Harkin; Richard D Kennedy
Journal:  J Natl Cancer Inst       Date:  2016-10-05       Impact factor: 13.506

8.  A tissue biomarker panel predicting systemic progression after PSA recurrence post-definitive prostate cancer therapy.

Authors:  Tohru Nakagawa; Thomas M Kollmeyer; Bruce W Morlan; S Keith Anderson; Eric J Bergstralh; Brian J Davis; Yan W Asmann; George G Klee; Karla V Ballman; Robert B Jenkins
Journal:  PLoS One       Date:  2008-05-28       Impact factor: 3.240

9.  Analytical validation of the Oncotype DX prostate cancer assay - a clinical RT-PCR assay optimized for prostate needle biopsies.

Authors:  Dejan Knezevic; Audrey D Goddard; Nisha Natraj; Diana B Cherbavaz; Kim M Clark-Langone; Jay Snable; Drew Watson; Sara M Falzarano; Cristina Magi-Galluzzi; Eric A Klein; Christopher Quale
Journal:  BMC Genomics       Date:  2013-10-08       Impact factor: 3.969

10.  Transcription Factor Profiling to Predict Recurrence-Free Survival in Breast Cancer: Development and Validation of a Nomogram to Optimize Clinical Management.

Authors:  Hengyu Chen; Xianxiong Ma; Ming Yang; Mengyi Wang; Lei Li; Tao Huang
Journal:  Front Genet       Date:  2020-04-24       Impact factor: 4.599

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  6 in total

1.  Proteomic Distributions in CD34+ Microvascular Niche Patterns of Glioblastoma.

Authors:  Jintao Chen; Sifeng Mao; Ziyi He; Lijuan Yang; Jinfeng Zhang; Jin-Ming Lin; Zhi-Xiong Lin
Journal:  J Histochem Cytochem       Date:  2021-11-09       Impact factor: 2.479

2.  Development and Validation of an 8-Gene Signature to Improve Survival Prediction of Colorectal Cancer.

Authors:  Leqi Zhou; Yue Yu; Rongbo Wen; Kuo Zheng; Siyuan Jiang; Xiaoming Zhu; Jinke Sui; Haifeng Gong; Zheng Lou; Liqiang Hao; Guanyu Yu; Wei Zhang
Journal:  Front Oncol       Date:  2022-05-10       Impact factor: 5.738

3.  The Quandary of DNA-Based Treatment Assessment in De Novo Metastatic Prostate Cancer in the Era of Precision Oncology.

Authors:  Sigve Nakken; Wolfgang Lilleby; Marta D Switlyk; Karen E Knudsen; Oscar Lilleby; Sen Zhao; Fatemeh Kaveh; Per O Ekstrøm; Alfonso Urbanucci; Eivind Hovig
Journal:  J Pers Med       Date:  2021-04-22

4.  NLRP3 inflammasome promoted the malignant progression of prostate cancer via the activation of caspase-1.

Authors:  Zheng Xu; Hao Wang; Zhiqiang Qin; Feng Zhao; Liuhua Zhou; Luwei Xu; Ruipeng Jia
Journal:  Cell Death Discov       Date:  2021-12-20

5.  Development and Validation of a 7-Gene Prognostic Signature to Improve Survival Prediction in Pancreatic Ductal Adenocarcinoma.

Authors:  Zengyu Feng; Hao Qian; Kexian Li; Jianyao Lou; Yulian Wu; Chenghong Peng
Journal:  Front Mol Biosci       Date:  2021-05-21

6.  A Personalized Genomics Approach of the Prostate Cancer.

Authors:  Sanda Iacobas; Dumitru A Iacobas
Journal:  Cells       Date:  2021-06-30       Impact factor: 6.600

  6 in total

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