Literature DB >> 33521328

A simple ATAC-seq protocol for population epigenetics.

Ronaldo de Carvalho Augusto1,2, Aki Minoda3, Christoph Grunau1.   

Abstract

We describe here a protocol for the generation of sequence-ready libraries for population epigenomics studies. The protocol is a streamlined version of the Assay for transposase accessible chromatin with high-throughput sequencing (ATAC-seq) that provides a positive display of accessible, presumably euchromatic regions. The protocol is straightforward and can be used with small individuals such as daphnia and schistosome worms, and probably many other biological samples of comparable size, and it requires little molecular biology handling expertise. Copyright:
© 2020 Augusto RdC et al.

Entities:  

Keywords:  ATAC-seq; Daphnia pulex; Schistosoma mansoni; epigenetics; epigenomics

Year:  2020        PMID: 33521328      PMCID: PMC7814285          DOI: 10.12688/wellcomeopenres.15552.1

Source DB:  PubMed          Journal:  Wellcome Open Res        ISSN: 2398-502X



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