Literature DB >> 33521057

Binding Revisited-Avidity in Cellular Function and Signaling.

Simon Erlendsson1,2, Kaare Teilum3.   

Abstract

When characterizing biomolecular interactions, avidity, is an umbrella term used to describe the accumulated strength of multiple specific and unspecific interactions between two or more interaction partners. In contrast to the affinity, which is often sufficient to describe monovalent interactions in solution and where the binding strength can be accurately determined by considering only the relationship between the microscopic association and dissociation rates, the avidity is a phenomenological macroscopic parameter linked to several microscopic events. Avidity also covers potential effects of reduced dimensionality and/or hindered diffusion observed at or near surfaces e.g., at the cell membrane. Avidity is often used to describe the discrepancy or the "extra on top" when cellular interactions display binding that are several orders of magnitude stronger than those estimated in vitro. Here we review the principles and theoretical frameworks governing avidity in biological systems and the methods for predicting and simulating avidity. While the avidity and effects thereof are well-understood for extracellular biomolecular interactions, we present here examples of, and discuss how, avidity and the underlying kinetics influences intracellular signaling processes.
Copyright © 2021 Erlendsson and Teilum.

Entities:  

Keywords:  avidity; cellular avidity; functional affinity; modeling avidity; retention time

Year:  2021        PMID: 33521057      PMCID: PMC7841115          DOI: 10.3389/fmolb.2020.615565

Source DB:  PubMed          Journal:  Front Mol Biosci        ISSN: 2296-889X


  11 in total

1.  Supramolecular "Click Chemistry" for Targeting in the Body.

Authors:  Christopher J Addonizio; Brant D Gates; Matthew J Webber
Journal:  Bioconjug Chem       Date:  2021-08-20       Impact factor: 6.069

2.  Homodimer 99mTc-HYNIC-E(SSSLTVPWY)2 peptide improved HER2-overexpressed tumor targeting and imaging.

Authors:  Fatemeh Ebrahimi; Zohreh Noaparast; Seyed Mohammad Abedi; Seyed Jalal Hosseinimehr
Journal:  Med Oncol       Date:  2022-09-29       Impact factor: 3.738

3.  Multimericity Amplifies the Synergy of BCR and TLR4 for B Cell Activation and Antibody Class Switching.

Authors:  Egest J Pone; Jenny E Hernandez-Davies; Sharon Jan; Emily Silzel; Philip L Felgner; D Huw Davies
Journal:  Front Immunol       Date:  2022-05-19       Impact factor: 8.786

4.  On the specificity of protein-protein interactions in the context of disorder.

Authors:  Kaare Teilum; Johan G Olsen; Birthe B Kragelund
Journal:  Biochem J       Date:  2021-06-11       Impact factor: 3.857

Review 5.  Physiological Considerations for Modeling in vivo Antibody-Target Interactions.

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Journal:  Front Pharmacol       Date:  2022-02-24       Impact factor: 5.988

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Authors:  Michael Kovermann; Ulrich Weininger; Christian Löw
Journal:  Protein Sci       Date:  2022-01-12       Impact factor: 6.725

7.  Interplay of Affinity and Surface Tethering in Protein Recognition.

Authors:  Ali Imran; Brandon S Moyer; Aaron J Wolfe; Michael S Cosgrove; Dmitrii E Makarov; Liviu Movileanu
Journal:  J Phys Chem Lett       Date:  2022-04-29       Impact factor: 6.888

8.  A context-dependent and disordered ubiquitin-binding motif.

Authors:  Jesper E Dreier; Andreas Prestel; João M Martins; Sebastian S Brøndum; Olaf Nielsen; Anna E Garbers; Hiroaki Suga; Wouter Boomsma; Joseph M Rogers; Rasmus Hartmann-Petersen; Birthe B Kragelund
Journal:  Cell Mol Life Sci       Date:  2022-08-16       Impact factor: 9.207

Review 9.  Searching for the Secret of Stickiness: How Biofilms Adhere to Surfaces.

Authors:  Zhaowei Jiang; Thomas Nero; Sampriti Mukherjee; Rich Olson; Jing Yan
Journal:  Front Microbiol       Date:  2021-07-08       Impact factor: 6.064

Review 10.  Structural and Computational Studies of the SARS-CoV-2 Spike Protein Binding Mechanisms with Nanobodies: From Structure and Dynamics to Avidity-Driven Nanobody Engineering.

Authors:  Gennady Verkhivker
Journal:  Int J Mol Sci       Date:  2022-03-08       Impact factor: 5.923

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