Literature DB >> 33520729

LncRNA-Encoded Peptide: Functions and Predicting Methods.

Jiani Xing1, Haizhou Liu2, Wei Jiang2, Lihong Wang1,3.   

Abstract

Long non-coding RNA (lncRNA) was originally defined as the representative of the non-coding RNAs and unable to encode. However, recent reports suggest that some lncRNAs actually contain open reading frames that encode peptides. These coding products play important roles in the pathogenesis of many diseases. Here, we summarize the regulatory pathways of mammalian lncRNA-encoded peptides in influencing muscle function, mRNA stability, gene expression, and so on. We also address the promoting and inhibiting functions of the peptides in different cancers and other diseases. Then we introduce the computational predicting methods and data resources to predict the coding ability of lncRNA. The intention of this review is to provide references for further coding research and contribute to reveal the potential prospects for targeted tumor therapy.
Copyright © 2021 Xing, Liu, Jiang and Wang.

Entities:  

Keywords:  Ribo-seq; cancer; long non-coding RNA; peptide; translation

Year:  2021        PMID: 33520729      PMCID: PMC7842084          DOI: 10.3389/fonc.2020.622294

Source DB:  PubMed          Journal:  Front Oncol        ISSN: 2234-943X            Impact factor:   6.244


  13 in total

Review 1.  Long non-coding RNAs as possible therapeutic targets in protozoa, and in Schistosoma and other helminths.

Authors:  Gilbert O Silveira; Helena S Coelho; Murilo S Amaral; Sergio Verjovski-Almeida
Journal:  Parasitol Res       Date:  2021-12-03       Impact factor: 2.289

Review 2.  Message in hand: the application of CRISPRi, RNAi, and LncRNA in adenocarcinoma.

Authors:  Ting Wang; Yunhong Yao; Xinrong Hu; Yi Zhao
Journal:  Med Oncol       Date:  2022-07-14       Impact factor: 3.738

3.  Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma.

Authors:  Vinicius Ferreira da Paixão; Omar Julio Sosa; Diogo Vieira da Silva Pellegrina; Bianca Dazzani; Thalita Bueno Corrêa; Ester Risério Bertoldi; Luís Bruno da Cruz E Alves-de-Moraes; Diogo de Oliveira Pessoa; Victoria de Paiva Oliveira; Ricardo Alberto Chiong Zevallos; Lilian Cristina Russo; Fabio Luis Forti; João Eduardo Ferreira; Helano Carioca Freitas; José Jukemura; Marcel Cerqueira César Machado; Maria Dirlei Begnami; João Carlos Setubal; Daniela Sanchez Bassères; Eduardo Moraes Reis
Journal:  Cell Oncol (Dordr)       Date:  2022-05-14       Impact factor: 7.051

Review 4.  Neuroepigenetic Mechanisms of Action of Ultrashort Peptides in Alzheimer's Disease.

Authors:  Anastasiia Ilina; Vladimir Khavinson; Natalia Linkova; Mikhael Petukhov
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

Review 5.  Long non-coding RNAs and microRNAs as crucial regulators in cardio-oncology.

Authors:  Sarath Babu Nukala; Jordan Jousma; Yoonje Cho; Won Hee Lee; Sang-Ging Ong
Journal:  Cell Biosci       Date:  2022-03-04       Impact factor: 7.133

Review 6.  Microproteins in skeletal muscle: hidden keys in muscle physiology.

Authors:  Bernardo Bonilauri; Bruno Dallagiovanna
Journal:  J Cachexia Sarcopenia Muscle       Date:  2021-11-30       Impact factor: 12.910

7.  Hundreds of LncRNAs Display Circadian Rhythmicity in Zebrafish Larvae.

Authors:  Shital Kumar Mishra; Zhaomin Zhong; Han Wang
Journal:  Cells       Date:  2021-11-15       Impact factor: 6.600

8.  Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma.

Authors:  Yuting Qiu; Haobo Li; Qian Zhang; Xinwei Qiao; Jing Wu
Journal:  Appl Bionics Biomech       Date:  2022-04-08       Impact factor: 1.664

9.  RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction.

Authors:  Thaís A R Ramos; Nilbson R O Galindo; Raúl Arias-Carrasco; Cecília F da Silva; Vinicius Maracaja-Coutinho; Thaís G do Rêgo
Journal:  F1000Res       Date:  2021-04-26

10.  SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients.

Authors:  Xiaotong Luo; Yuantai Huang; Huiqin Li; Yihai Luo; Zhixiang Zuo; Jian Ren; Yubin Xie
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

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