Literature DB >> 33517929

Diversity of SARS-CoV-2 isolates driven by pressure and health index.

R K Sanayaima Singh1, Md Zubbair Malik2, R K Brojen Singh2.   

Abstract

One of the main concerns about the fast spreading coronavirus disease 2019 (Covid-19) pandemic is how to intervene. We analysed severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) isolates data using the multifractal approach and found a rich in viral genome diversity, which could be one of the root causes of the fast Covid-19 pandemic and is strongly affected by pressure and health index of the hosts inhabited regions. The calculated mutation rate (mr) is observed to be maximum at a particular pressure, beyond which mr maintains diversity. Hurst exponent and fractal dimension are found to be optimal at a critical pressure (Pm), whereas, for P > Pm and P < Pm, we found rich genome diversity relating to complicated genome organisation and virulence of the virus. The values of these complexity measurement parameters are found to be increased linearly with health index values.

Entities:  

Keywords:  Fractal dimension; Hurst exponent; SARS-CoV-2; health index; multifractal approach; pressure

Year:  2021        PMID: 33517929      PMCID: PMC7884664          DOI: 10.1017/S0950268821000248

Source DB:  PubMed          Journal:  Epidemiol Infect        ISSN: 0950-2688            Impact factor:   2.451


  27 in total

Review 1.  Pressure effects on in vivo microbial processes.

Authors:  D H Bartlett
Journal:  Biochim Biophys Acta       Date:  2002-03-25

2.  Long-range correlations in nucleotide sequences.

Authors:  C K Peng; S V Buldyrev; A L Goldberger; S Havlin; F Sciortino; M Simons; H E Stanley
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

3.  Fractal measures and their singularities: The characterization of strange sets.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1986-02

Review 4.  High pressure influences on gene and protein expression.

Authors:  D H Bartlett; C Kato; K Horikoshi
Journal:  Res Microbiol       Date:  1995-10       Impact factor: 3.992

5.  A speed-fidelity trade-off determines the mutation rate and virulence of an RNA virus.

Authors:  William J Fitzsimmons; Robert J Woods; John T McCrone; Andrew Woodman; Jamie J Arnold; Madhumita Yennawar; Richard Evans; Craig E Cameron; Adam S Lauring
Journal:  PLoS Biol       Date:  2018-06-28       Impact factor: 8.029

6.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

Review 7.  Hosts and Sources of Endemic Human Coronaviruses.

Authors:  Victor M Corman; Doreen Muth; Daniela Niemeyer; Christian Drosten
Journal:  Adv Virus Res       Date:  2018-02-16       Impact factor: 9.937

Review 8.  World Health Organization declares global emergency: A review of the 2019 novel coronavirus (COVID-19).

Authors:  Catrin Sohrabi; Zaid Alsafi; Niamh O'Neill; Mehdi Khan; Ahmed Kerwan; Ahmed Al-Jabir; Christos Iosifidis; Riaz Agha
Journal:  Int J Surg       Date:  2020-02-26       Impact factor: 6.071

View more
  1 in total

1.  Multi-Targeted Approaches and Drug Repurposing Reveal Possible SARS-CoV-2 Inhibitors.

Authors:  Khalid Mashay Alanazi; Mohammad Abul Farah; Yan-Yan Hor
Journal:  Vaccines (Basel)       Date:  2021-12-26
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.