Literature DB >> 33514701

De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG islands.

Roza H Ali Masalmeh1, Francesca Taglini1,2, Cristina Rubio-Ramon1,2, Kamila I Musialik1,2, Jonathan Higham1, Hazel Davidson-Smith1, Ioannis Kafetzopoulos1,2, Kamila P Pawlicka1,2, Hannah M Finan1,2, Richard Clark3, Jimi Wills2, Andrew J Finch2,4, Lee Murphy3, Duncan Sproul5,6.   

Abstract

The aberrant gain of DNA methylation at CpG islands is frequently observed in colorectal tumours and may silence the expression of tumour suppressors such as MLH1. Current models propose that these CpG islands are targeted by de novo DNA methyltransferases in a sequence-specific manner, but this has not been tested. Using ectopically integrated CpG islands, here we find that aberrantly methylated CpG islands are subject to low levels of de novo DNA methylation activity in colorectal cancer cells. By delineating DNA methyltransferase targets, we find that instead de novo DNA methylation activity is targeted primarily to CpG islands marked by the histone modification H3K36me3, a mark associated with transcriptional elongation. These H3K36me3 marked CpG islands are heavily methylated in colorectal tumours and the normal colon suggesting that de novo DNA methyltransferase activity at CpG islands in colorectal cancer is focused on similar targets to normal tissues and not greatly remodelled by tumourigenesis.

Entities:  

Year:  2021        PMID: 33514701     DOI: 10.1038/s41467-020-20716-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  77 in total

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Authors:  Albert Jeltsch
Journal:  Epigenetics       Date:  2006-04-05       Impact factor: 4.528

Review 2.  CpG islands and the regulation of transcription.

Authors:  Aimée M Deaton; Adrian Bird
Journal:  Genes Dev       Date:  2011-05-15       Impact factor: 11.361

3.  Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1.

Authors:  L S Chuang; H I Ian; T W Koh; H H Ng; G Xu; B F Li
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

4.  DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development.

Authors:  M Okano; D W Bell; D A Haber; E Li
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

5.  Targeted mutation of the DNA methyltransferase gene results in embryonic lethality.

Authors:  E Li; T H Bestor; R Jaenisch
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

6.  Transcriptionally repressed genes become aberrantly methylated and distinguish tumors of different lineages in breast cancer.

Authors:  Duncan Sproul; Colm Nestor; Jayne Culley; Jacqueline H Dickson; J Michael Dixon; David J Harrison; Richard R Meehan; Andrew H Sims; Bernard H Ramsahoye
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

7.  Hit-and-run epigenetic editing prevents senescence entry in primary breast cells from healthy donors.

Authors:  Emily A Saunderson; Peter Stepper; Jennifer J Gomm; Lily Hoa; Adrienne Morgan; Michael D Allen; J Louise Jones; John G Gribben; Tomasz P Jurkowski; Gabriella Ficz
Journal:  Nat Commun       Date:  2017-11-13       Impact factor: 14.919

8.  Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns.

Authors:  Duncan Sproul; Robert R Kitchen; Colm E Nestor; J Michael Dixon; Andrew H Sims; David J Harrison; Bernard H Ramsahoye; Richard R Meehan
Journal:  Genome Biol       Date:  2012-10-03       Impact factor: 13.583

Review 9.  Genomic insights into cancer-associated aberrant CpG island hypermethylation.

Authors:  Duncan Sproul; Richard R Meehan
Journal:  Brief Funct Genomics       Date:  2013-01-21       Impact factor: 4.241

Review 10.  Allosteric control of mammalian DNA methyltransferases - a new regulatory paradigm.

Authors:  Albert Jeltsch; Renata Z Jurkowska
Journal:  Nucleic Acids Res       Date:  2016-08-12       Impact factor: 16.971

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  6 in total

Review 1.  Epigenetic Regulation of Intestinal Stem Cells and Disease: A Balancing Act of DNA and Histone Methylation.

Authors:  Alireza Lorzadeh; Maile Romero-Wolf; Ajay Goel; Unmesh Jadhav
Journal:  Gastroenterology       Date:  2021-03-26       Impact factor: 33.883

2.  Misregulation of the expression and activity of DNA methyltransferases in cancer.

Authors:  Isaiah K Mensah; Allison B Norvil; Lama AlAbdi; Sarah McGovern; Christopher J Petell; Ming He; Humaira Gowher
Journal:  NAR Cancer       Date:  2021-12-01

Review 3.  H3K36 trimethylation-mediated biological functions in cancer.

Authors:  Chu Xiao; Tao Fan; He Tian; Yujia Zheng; Zheng Zhou; Shuofeng Li; Chunxiang Li; Jie He
Journal:  Clin Epigenetics       Date:  2021-10-29       Impact factor: 6.551

4.  WTAP-mediated m6A modification of lncRNA NORAD promotes intervertebral disc degeneration.

Authors:  Gaocai Li; Liang Ma; Shujie He; Rongjin Luo; Bingjin Wang; Weifeng Zhang; Yu Song; Zhiwei Liao; Wencan Ke; Qian Xiang; Xiaobo Feng; Xinghuo Wu; Yukun Zhang; Kun Wang; Cao Yang
Journal:  Nat Commun       Date:  2022-03-18       Impact factor: 17.694

5.  TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis.

Authors:  Audrey Laurent; Thierry Madigou; Maud Bizot; Marion Turpin; Gaëlle Palierne; Elise Mahé; Sarah Guimard; Raphaël Métivier; Stéphane Avner; Christine Le Péron; Gilles Salbert
Journal:  Life Sci Alliance       Date:  2022-03-29

6.  VprBP directs epigenetic gene silencing through histone H2A phosphorylation in colon cancer.

Authors:  Nikhil Baban Ghate; Sangnam Kim; Erin Spiller; Sungmin Kim; Yonghwan Shin; Suhn K Rhie; Goar Smbatyan; Heinz-Josef Lenz; Shannon M Mumenthaler; Woojin An
Journal:  Mol Oncol       Date:  2021-08-08       Impact factor: 6.603

  6 in total

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