Literature DB >> 33514078

A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). II. Temperature transferability and structural properties at low temperature.

Jaehyeok Jin1, Alexander J Pak1, Yining Han1, Gregory A Voth1.   

Abstract

A number of studies have constructed coarse-grained (CG) models of water to understand its anomalous properties. Most of these properties emerge at low temperatures, and an accurate CG model needs to be applicable to these low-temperature ranges. However, direct use of CG models parameterized from other temperatures, e.g., room temperature, encounters a problem known as transferability, as the CG potential essentially follows the form of the many-body CG free energy function. Therefore, temperature-dependent changes to CG interactions must be accounted for. The collective behavior of water at low temperature is generally a many-body process, which often motivates the use of expensive many-body terms in the CG interactions. To surmount the aforementioned problems, we apply the Bottom-Up Many-Body Projected Water (BUMPer) CG model constructed from Paper I to study the low-temperature behavior of water. We report for the first time that the embedded three-body interaction enables BUMPer, despite its pairwise form, to capture the growth of ice at the ice/water interface with corroborating many-body correlations during the crystal growth. Furthermore, we propose temperature transferable BUMPer models that are indirectly constructed from the free energy decomposition scheme. Changes in CG interactions and corresponding structures are faithfully recapitulated by this framework. We further extend BUMPer to examine its ability to predict the structure, density, and diffusion anomalies by employing an alternative analysis based on structural correlations and pairwise potential forms to predict such anomalies. The presented analysis highlights the existence of these anomalies in the low-temperature regime and overcomes potential transferability problems.

Entities:  

Year:  2021        PMID: 33514078      PMCID: PMC7826166          DOI: 10.1063/5.0026652

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  103 in total

1.  Structures of high and low density amorphous ice by neutron diffraction.

Authors:  J L Finney; A Hallbrucker; I Kohl; A K Soper; D T Bowron
Journal:  Phys Rev Lett       Date:  2002-05-17       Impact factor: 9.161

2.  Monte Carlo study of a simple model bulk-ice-Ih system: P-T melting behavior at constant volume.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-01-01

3.  Molecular dynamics study of pressure enhancement of ion mobilities in liquid silica.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-04-17       Impact factor: 9.161

4.  Flexible simple point-charge water model with improved liquid-state properties.

Authors:  Yujie Wu; Harald L Tepper; Gregory A Voth
Journal:  J Chem Phys       Date:  2006-01-14       Impact factor: 3.488

5.  Waterlike hierarchy of anomalies in a continuous spherical shouldered potential.

Authors:  Alan Barros de Oliveira; Giancarlo Franzese; Paulo A Netz; Marcia C Barbosa
Journal:  J Chem Phys       Date:  2008-02-14       Impact factor: 3.488

6.  Anomalous waterlike behavior in spherically-symmetric water models optimized with the relative entropy.

Authors:  Aviel Chaimovich; M Scott Shell
Journal:  Phys Chem Chem Phys       Date:  2009-01-27       Impact factor: 3.676

7.  Dual-potential approach for coarse-grained implicit solvent models with accurate, internally consistent energetics and predictive transferability.

Authors:  Kathryn M Lebold; W G Noid
Journal:  J Chem Phys       Date:  2019-10-28       Impact factor: 3.488

8.  Van der Waals Perspective on Coarse-Graining: Progress toward Solving Representability and Transferability Problems.

Authors:  Nicholas J H Dunn; Thomas T Foley; William G Noid
Journal:  Acc Chem Res       Date:  2016-12-08       Impact factor: 22.384

9.  Water: A Tale of Two Liquids.

Authors:  Paola Gallo; Katrin Amann-Winkel; Charles Austen Angell; Mikhail Alexeevich Anisimov; Frédéric Caupin; Charusita Chakravarty; Erik Lascaris; Thomas Loerting; Athanassios Zois Panagiotopoulos; John Russo; Jonas Alexander Sellberg; Harry Eugene Stanley; Hajime Tanaka; Carlos Vega; Limei Xu; Lars Gunnar Moody Pettersson
Journal:  Chem Rev       Date:  2016-07-05       Impact factor: 60.622

10.  Quantitative investigation of the two-state picture for water in the normal liquid and the supercooled regime.

Authors:  S R Accordino; J A Rodriguez Fris; F Sciortino; G A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2011-05-16       Impact factor: 1.890

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  1 in total

Review 1.  Bottom-up Coarse-Graining: Principles and Perspectives.

Authors:  Jaehyeok Jin; Alexander J Pak; Aleksander E P Durumeric; Timothy D Loose; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

  1 in total

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