Literature DB >> 33511156

Antagonistic Control of Genetic Circuit Performance for Rapid Analysis of Targeted Enzyme Activity in Living Cells.

Kil Koang Kwon1, Haseong Kim1,2, Soo-Jin Yeom3, Eugene Rha1, Jinju Lee1,2, Hyewon Lee1, Dae-Hee Lee1,2, Seung-Goo Lee1,2.   

Abstract

Genetic circuits have been developed for quantitative measurement of enzyme activity, metabolic engineering of strain development, and dynamic regulation of microbial cells. A genetic circuit consists of several bio-elements, including enzymes and regulatory cassettes, that can generate the desired output signal, which is then used as a precise criterion for enzyme screening and engineering. Antagonists and inhibitors are small molecules with inhibitory effects on regulators and enzymes, respectively. In this study, an antagonist and an inhibitor were applied to a genetic circuit for a dynamic detection range. We developed a genetic circuit relying on regulators and enzymes, allowing for straightforward control of its output signal without additional genetic modification. We used para-nitrophenol and alanine as an antagonist of DmpR and inhibitor of tyrosine phenol-lyase, respectively. We show that the antagonist resets the detection range of the genetic circuit similarly to a resistor in an electrical logic circuit. These biological resistors in genetic circuits can be used as a rapid and precise controller of variable outputs with minimal circuit configuration.
Copyright © 2021 Kwon, Kim, Yeom, Rha, Lee, Lee, Lee and Lee.

Entities:  

Keywords:  antagonist; flow cytometry; genetic circuit; inhibitor; phenolic compound; resistor

Year:  2021        PMID: 33511156      PMCID: PMC7835892          DOI: 10.3389/fmolb.2020.599878

Source DB:  PubMed          Journal:  Front Mol Biosci        ISSN: 2296-889X


  26 in total

1.  Synthetic biosensors for precise gene control and real-time monitoring of metabolites.

Authors:  Jameson K Rogers; Christopher D Guzman; Noah D Taylor; Srivatsan Raman; Kelley Anderson; George M Church
Journal:  Nucleic Acids Res       Date:  2015-07-07       Impact factor: 16.971

2.  Functional optimization of gene clusters by combinatorial design and assembly.

Authors:  Michael J Smanski; Swapnil Bhatia; Dehua Zhao; YongJin Park; Lauren B A Woodruff; Georgia Giannoukos; Dawn Ciulla; Michele Busby; Johnathan Calderon; Robert Nicol; D Benjamin Gordon; Douglas Densmore; Christopher A Voigt
Journal:  Nat Biotechnol       Date:  2014-11-24       Impact factor: 54.908

3.  Tunable Control of an Escherichia coli Expression System for the Overproduction of Membrane Proteins by Titrated Expression of a Mutant lac Repressor.

Authors:  Seong Keun Kim; Dae-Hee Lee; Oh Cheol Kim; Jihyun F Kim; Sung Ho Yoon
Journal:  ACS Synth Biol       Date:  2017-05-31       Impact factor: 5.110

Review 4.  Principles of genetic circuit design.

Authors:  Jennifer A N Brophy; Christopher A Voigt
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

5.  Product-induced gene expression, a product-responsive reporter assay used to screen metagenomic libraries for enzyme-encoding genes.

Authors:  Taku Uchiyama; Kentaro Miyazaki
Journal:  Appl Environ Microbiol       Date:  2010-09-10       Impact factor: 4.792

6.  SoxR as a single-cell biosensor for NADPH-consuming enzymes in Escherichia coli.

Authors:  Solvej Siedler; Georg Schendzielorz; Stephan Binder; Lothar Eggeling; Stephanie Bringer; Michael Bott
Journal:  ACS Synth Biol       Date:  2013-12-09       Impact factor: 5.110

7.  Protein dynamics and conformational selection in bidirectional signal transduction.

Authors:  Ruth Nussinov; Buyong Ma
Journal:  BMC Biol       Date:  2012-01-25       Impact factor: 7.431

Review 8.  Transcription factor-based biosensors in biotechnology: current state and future prospects.

Authors:  Regina Mahr; Julia Frunzke
Journal:  Appl Microbiol Biotechnol       Date:  2015-10-31       Impact factor: 4.813

9.  Tetrameric architecture of an active phenol-bound form of the AAA+ transcriptional regulator DmpR.

Authors:  Kwang-Hyun Park; Sungchul Kim; Su-Jin Lee; Jee-Eun Cho; Vinod Vikas Patil; Arti Baban Dumbrepatil; Hyung-Nam Song; Woo-Chan Ahn; Chirlmin Joo; Seung-Goo Lee; Victoria Shingler; Eui-Jeon Woo
Journal:  Nat Commun       Date:  2020-06-01       Impact factor: 14.919

10.  Acclimation of bacterial cell state for high-throughput enzyme engineering using a DmpR-dependent transcriptional activation system.

Authors:  Kil Koang Kwon; Soo-Jin Yeom; Su-Lim Choi; Eugene Rha; Hyewon Lee; Haseong Kim; Dae-Hee Lee; Seung-Goo Lee
Journal:  Sci Rep       Date:  2020-04-08       Impact factor: 4.379

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