Literature DB >> 33510888

Protein-Protein Interaction Analysis through Network Topology (Oral Cancer).

Fazal Wahab Khattak1, Yousef Salamah Alhwaiti2, Amjad Ali1, Mohammad Faisal3, Muhammad Hameed Siddiqi3.   

Abstract

Oral cancer is a complex disorder. Its creation and spreading are due to the interaction of several proteins and genes in different biological thoroughfares. To study biological pathways, many high-yield methods have been used. Efforts to merge several data found at separate levels related to biological thoroughfares and interlinkage networks remain elusive. In our research work, we have proposed a technique known as protein-protein interaction network for analysis and exploring the genes involved in oral cancer disorders. The previous studies have not fully analyzed the proteins or genes involved in oral cancer. Our proposed technique is fully interactive and analyzes the data of oral cancer disorder more accurately and efficiently. The methods used here enabled us to observe the wide network consists of one mighty network comprising of 208 nodes 1572 edges which connect these nodes and various detached small networks. In our study, TP53 is a gene that occupied an important position in the network. TP53 has a 113-degree value and 0.03881821 BC value, indicating that TP53 is centrally localized in the network and is a significant bottleneck protein in the oral cancer protein-protein interaction network. These findings suggested that the pathogenesis of oral cancer variation was organized by means of an integrated PPI network, which is centered on TP53. Furthermore, our identification shows that TP53 is the key role-playing protein in the oral cancer network, and its significance in the cellular networks in the body is determined as well. As TP53 (tumor protein 53) is a vital player in the cell division process, the cells may not grow or divide disorderly; it fulfills the function of at least one of the gene groups in oral cancer. However, the latter progression in the area is any measure; the intention of developing these networks is to transfigure sketch of core disease development, prognosis, and treatment.
Copyright © 2021 Fazal Wahab Khattak et al.

Entities:  

Year:  2021        PMID: 33510888      PMCID: PMC7826244          DOI: 10.1155/2021/6623904

Source DB:  PubMed          Journal:  J Healthc Eng        ISSN: 2040-2295            Impact factor:   2.682


  20 in total

1.  Topological structure analysis of the protein-protein interaction network in budding yeast.

Authors:  Dongbo Bu; Yi Zhao; Lun Cai; Hong Xue; Xiaopeng Zhu; Hongchao Lu; Jingfen Zhang; Shiwei Sun; Lunjiang Ling; Nan Zhang; Guojie Li; Runsheng Chen
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

2.  Functional topology in a network of protein interactions.

Authors:  N Przulj; D A Wigle; I Jurisica
Journal:  Bioinformatics       Date:  2004-02-12       Impact factor: 6.937

3.  A human protein-protein interaction network: a resource for annotating the proteome.

Authors:  Ulrich Stelzl; Uwe Worm; Maciej Lalowski; Christian Haenig; Felix H Brembeck; Heike Goehler; Martin Stroedicke; Martina Zenkner; Anke Schoenherr; Susanne Koeppen; Jan Timm; Sascha Mintzlaff; Claudia Abraham; Nicole Bock; Silvia Kietzmann; Astrid Goedde; Engin Toksöz; Anja Droege; Sylvia Krobitsch; Bernhard Korn; Walter Birchmeier; Hans Lehrach; Erich E Wanker
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

4.  Association of TP53 mutations with stem cell-like gene expression and survival of patients with hepatocellular carcinoma.

Authors:  Hyun Goo Woo; Xin Wei Wang; Anuradha Budhu; Yun Hee Kim; So Mee Kwon; Zhao-You Tang; Zongtang Sun; Curtis C Harris; Snorri S Thorgeirsson
Journal:  Gastroenterology       Date:  2010-11-19       Impact factor: 22.682

Review 5.  Preventive measures in oral cancer: An overview.

Authors:  Sharon D'souza; Veeranjaneyulu Addepalli
Journal:  Biomed Pharmacother       Date:  2018-08-03       Impact factor: 6.529

6.  Why do hubs tend to be essential in protein networks?

Authors:  Xionglei He; Jianzhi Zhang
Journal:  PLoS Genet       Date:  2006-04-26       Impact factor: 5.917

7.  Introducing crucial protein panel of gastric adenocarcinoma disease.

Authors:  Mostafa Rezaei-Tavirani; Majid Rezaei-Tavirani; Vahid Mansouri; Seyed Mohammad Mahdavi; Reza Valizadeh; Mohammad Rostami-Nejad; Mohammad Reza Zali
Journal:  Gastroenterol Hepatol Bed Bench       Date:  2017

8.  Integrated Bioinformatics Analysis of mRNAs and miRNAs Identified Potential Biomarkers of Oral Squamous Cell Carcinoma.

Authors:  Nasrin Amiri-Dashatan; Mehdi Koushki; Ali Jalilian; Nayeb Ali Ahmadi; Mostafa Rezaei-Tavirani
Journal:  Asian Pac J Cancer Prev       Date:  2020-06-29

9.  Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010.

Authors:  Rafael Lozano; Mohsen Naghavi; Kyle Foreman; Stephen Lim; Kenji Shibuya; Victor Aboyans; Jerry Abraham; Timothy Adair; Rakesh Aggarwal; Stephanie Y Ahn; Miriam Alvarado; H Ross Anderson; Laurie M Anderson; Kathryn G Andrews; Charles Atkinson; Larry M Baddour; Suzanne Barker-Collo; David H Bartels; Michelle L Bell; Emelia J Benjamin; Derrick Bennett; Kavi Bhalla; Boris Bikbov; Aref Bin Abdulhak; Gretchen Birbeck; Fiona Blyth; Ian Bolliger; Soufiane Boufous; Chiara Bucello; Michael Burch; Peter Burney; Jonathan Carapetis; Honglei Chen; David Chou; Sumeet S Chugh; Luc E Coffeng; Steven D Colan; Samantha Colquhoun; K Ellicott Colson; John Condon; Myles D Connor; Leslie T Cooper; Matthew Corriere; Monica Cortinovis; Karen Courville de Vaccaro; William Couser; Benjamin C Cowie; Michael H Criqui; Marita Cross; Kaustubh C Dabhadkar; Nabila Dahodwala; Diego De Leo; Louisa Degenhardt; Allyne Delossantos; Julie Denenberg; Don C Des Jarlais; Samath D Dharmaratne; E Ray Dorsey; Tim Driscoll; Herbert Duber; Beth Ebel; Patricia J Erwin; Patricia Espindola; Majid Ezzati; Valery Feigin; Abraham D Flaxman; Mohammad H Forouzanfar; Francis Gerry R Fowkes; Richard Franklin; Marlene Fransen; Michael K Freeman; Sherine E Gabriel; Emmanuela Gakidou; Flavio Gaspari; Richard F Gillum; Diego Gonzalez-Medina; Yara A Halasa; Diana Haring; James E Harrison; Rasmus Havmoeller; Roderick J Hay; Bruno Hoen; Peter J Hotez; Damian Hoy; Kathryn H Jacobsen; Spencer L James; Rashmi Jasrasaria; Sudha Jayaraman; Nicole Johns; Ganesan Karthikeyan; Nicholas Kassebaum; Andre Keren; Jon-Paul Khoo; Lisa Marie Knowlton; Olive Kobusingye; Adofo Koranteng; Rita Krishnamurthi; Michael Lipnick; Steven E Lipshultz; Summer Lockett Ohno; Jacqueline Mabweijano; Michael F MacIntyre; Leslie Mallinger; Lyn March; Guy B Marks; Robin Marks; Akira Matsumori; Richard Matzopoulos; Bongani M Mayosi; John H McAnulty; Mary M McDermott; John McGrath; George A Mensah; Tony R Merriman; Catherine Michaud; Matthew Miller; Ted R Miller; Charles Mock; Ana Olga Mocumbi; Ali A Mokdad; Andrew Moran; Kim Mulholland; M Nathan Nair; Luigi Naldi; K M Venkat Narayan; Kiumarss Nasseri; Paul Norman; Martin O'Donnell; Saad B Omer; Katrina Ortblad; Richard Osborne; Doruk Ozgediz; Bishnu Pahari; Jeyaraj Durai Pandian; Andrea Panozo Rivero; Rogelio Perez Padilla; Fernando Perez-Ruiz; Norberto Perico; David Phillips; Kelsey Pierce; C Arden Pope; Esteban Porrini; Farshad Pourmalek; Murugesan Raju; Dharani Ranganathan; Jürgen T Rehm; David B Rein; Guiseppe Remuzzi; Frederick P Rivara; Thomas Roberts; Felipe Rodriguez De León; Lisa C Rosenfeld; Lesley Rushton; Ralph L Sacco; Joshua A Salomon; Uchechukwu Sampson; Ella Sanman; David C Schwebel; Maria Segui-Gomez; Donald S Shepard; David Singh; Jessica Singleton; Karen Sliwa; Emma Smith; Andrew Steer; Jennifer A Taylor; Bernadette Thomas; Imad M Tleyjeh; Jeffrey A Towbin; Thomas Truelsen; Eduardo A Undurraga; N Venketasubramanian; Lakshmi Vijayakumar; Theo Vos; Gregory R Wagner; Mengru Wang; Wenzhi Wang; Kerrianne Watt; Martin A Weinstock; Robert Weintraub; James D Wilkinson; Anthony D Woolf; Sarah Wulf; Pon-Hsiu Yeh; Paul Yip; Azadeh Zabetian; Zhi-Jie Zheng; Alan D Lopez; Christopher J L Murray; Mohammad A AlMazroa; Ziad A Memish
Journal:  Lancet       Date:  2012-12-15       Impact factor: 79.321

10.  Duchenne Muscular Dystrophy (DMD) Protein-Protein Interaction Mapping.

Authors:  Mostafa Rezaei Tavirani; Farshad OkHOVATIAN; Mona Zamanian Azodi; Majid Rezaei Tavirani
Journal:  Iran J Child Neurol       Date:  2017
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  1 in total

Review 1.  Overview of methods for characterization and visualization of a protein-protein interaction network in a multi-omics integration context.

Authors:  Vivian Robin; Antoine Bodein; Marie-Pier Scott-Boyer; Mickaël Leclercq; Olivier Périn; Arnaud Droit
Journal:  Front Mol Biosci       Date:  2022-09-08
  1 in total

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