Literature DB >> 33510133

A small molecule compound with an indole moiety inhibits the main protease of SARS-CoV-2 and blocks virus replication.

Shin-Ichiro Hattori1, Nobuyo Higashi-Kuwata1, Hironori Hayashi2,3, Srinivasa Rao Allu4, Jakka Raghavaiah4, Haydar Bulut5, Debananda Das5, Brandon J Anson6, Emma K Lendy6, Yuki Takamatsu1, Nobutoki Takamune7, Naoki Kishimoto8, Kazutaka Murayama9, Kazuya Hasegawa10, Mi Li11,12, David A Davis13, Eiichi N Kodama3,14, Robert Yarchoan13, Alexander Wlodawer11, Shogo Misumi8, Andrew D Mesecar6, Arun K Ghosh4, Hiroaki Mitsuya15,16,17.   

Abstract

Except remdesivir, no specific antivirals for SARS-CoV-2 infection are currently available. Here, we characterize two small-molecule-compounds, named GRL-1720 and 5h, containing an indoline and indole moiety, respectively, which target the SARS-CoV-2 main protease (Mpro). We use VeroE6 cell-based assays with RNA-qPCR, cytopathic assays, and immunocytochemistry and show both compounds to block the infectivity of SARS-CoV-2 with EC50 values of 15 ± 4 and 4.2 ± 0.7 μM for GRL-1720 and 5h, respectively. Remdesivir permitted viral breakthrough at high concentrations; however, compound 5h completely blocks SARS-CoV-2 infection in vitro without viral breakthrough or detectable cytotoxicity. Combination of 5h and remdesivir exhibits synergism against SARS-CoV-2. Additional X-ray structural analysis show that 5h forms a covalent bond with Mpro and makes polar interactions with multiple active site amino acid residues. The present data suggest that 5h might serve as a lead Mpro inhibitor for the development of therapeutics for SARS-CoV-2 infection.

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Year:  2021        PMID: 33510133      PMCID: PMC7843602          DOI: 10.1038/s41467-021-20900-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  42 in total

Review 1.  Applications of calorimetric methods to drug discovery and the study of protein interactions.

Authors:  Patricia C Weber; F Raymond Salemme
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

2.  The calculation of microbial assays.

Authors:  C I BLISS
Journal:  Bacteriol Rev       Date:  1956-12

3.  Remdesivir for the Treatment of Covid-19 - Preliminary Report. Reply.

Authors:  John H Beigel; Kay M Tomashek; Lori E Dodd
Journal:  N Engl J Med       Date:  2020-07-10       Impact factor: 91.245

4.  Mechanism for controlling the dimer-monomer switch and coupling dimerization to catalysis of the severe acute respiratory syndrome coronavirus 3C-like protease.

Authors:  Jiahai Shi; J Sivaraman; Jianxing Song
Journal:  J Virol       Date:  2008-02-27       Impact factor: 5.103

5.  Maturation mechanism of severe acute respiratory syndrome (SARS) coronavirus 3C-like proteinase.

Authors:  Chunmei Li; Yifei Qi; Xin Teng; Zongchang Yang; Ping Wei; Changsheng Zhang; Lei Tan; Lu Zhou; Ying Liu; Luhua Lai
Journal:  J Biol Chem       Date:  2010-05-20       Impact factor: 5.157

6.  Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia.

Authors:  Qun Li; Xuhua Guan; Peng Wu; Xiaoye Wang; Lei Zhou; Yeqing Tong; Ruiqi Ren; Kathy S M Leung; Eric H Y Lau; Jessica Y Wong; Xuesen Xing; Nijuan Xiang; Yang Wu; Chao Li; Qi Chen; Dan Li; Tian Liu; Jing Zhao; Man Liu; Wenxiao Tu; Chuding Chen; Lianmei Jin; Rui Yang; Qi Wang; Suhua Zhou; Rui Wang; Hui Liu; Yinbo Luo; Yuan Liu; Ge Shao; Huan Li; Zhongfa Tao; Yang Yang; Zhiqiang Deng; Boxi Liu; Zhitao Ma; Yanping Zhang; Guoqing Shi; Tommy T Y Lam; Joseph T Wu; George F Gao; Benjamin J Cowling; Bo Yang; Gabriel M Leung; Zijian Feng
Journal:  N Engl J Med       Date:  2020-01-29       Impact factor: 176.079

Review 7.  Drug Development and Medicinal Chemistry Efforts toward SARS-Coronavirus and Covid-19 Therapeutics.

Authors:  Arun K Ghosh; Margherita Brindisi; Dana Shahabi; Mackenzie E Chapman; Andrew D Mesecar
Journal:  ChemMedChem       Date:  2020-05-07       Impact factor: 3.540

8.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

Review 9.  From SARS to MERS: crystallographic studies on coronaviral proteases enable antiviral drug design.

Authors:  Rolf Hilgenfeld
Journal:  FEBS J       Date:  2014-08-11       Impact factor: 5.542

10.  Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase.

Authors:  Keqiang Fan; Ping Wei; Qian Feng; Sidi Chen; Changkang Huang; Liang Ma; Bing Lai; Jianfeng Pei; Ying Liu; Jianguo Chen; Luhua Lai
Journal:  J Biol Chem       Date:  2003-10-15       Impact factor: 5.157

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  35 in total

Review 1.  Inhibition of the main protease of SARS-CoV-2 (Mpro) by repurposing/designing drug-like substances and utilizing nature's toolbox of bioactive compounds.

Authors:  Io Antonopoulou; Eleftheria Sapountzaki; Ulrika Rova; Paul Christakopoulos
Journal:  Comput Struct Biotechnol J       Date:  2022-03-14       Impact factor: 7.271

Review 2.  Novel Drug Design for Treatment of COVID-19: A Systematic Review of Preclinical Studies.

Authors:  Sarah Mousavi; Shima Zare; Mahmoud Mirzaei; Awat Feizi
Journal:  Can J Infect Dis Med Microbiol       Date:  2022-09-25       Impact factor: 2.585

3.  Discovery of 2-thiobenzimidazoles as noncovalent inhibitors of SARS-CoV-2 main protease.

Authors:  Davide Deodato; Nadeem Asad; Timothy M Dore
Journal:  Bioorg Med Chem Lett       Date:  2022-06-24       Impact factor: 2.940

Review 4.  The SARS-CoV-2 main protease (Mpro): Structure, function, and emerging therapies for COVID-19.

Authors:  Qing Hu; Yuan Xiong; Guang-Hao Zhu; Ya-Ni Zhang; Yi-Wen Zhang; Ping Huang; Guang-Bo Ge
Journal:  MedComm (2020)       Date:  2022-07-14

5.  Ligand-based and structure-based studies to develop predictive models for SARS-CoV-2 main protease inhibitors through the 3d-qsar.com portal.

Authors:  Eleonora Proia; Alessio Ragno; Lorenzo Antonini; Manuela Sabatino; Milan Mladenovič; Roberto Capobianco; Rino Ragno
Journal:  J Comput Aided Mol Des       Date:  2022-06-18       Impact factor: 4.179

6.  Covalent narlaprevir- and boceprevir-derived hybrid inhibitors of SARS-CoV-2 main protease.

Authors:  Daniel W Kneller; Hui Li; Gwyndalyn Phillips; Kevin L Weiss; Qiu Zhang; Mark A Arnould; Colleen B Jonsson; Surekha Surendranathan; Jyothi Parvathareddy; Matthew P Blakeley; Leighton Coates; John M Louis; Peter V Bonnesen; Andrey Kovalevsky
Journal:  Nat Commun       Date:  2022-04-27       Impact factor: 17.694

7.  Targeting the Main Protease of SARS-CoV-2: From the Establishment of High Throughput Screening to the Design of Tailored Inhibitors.

Authors:  Julian Breidenbach; Carina Lemke; Thanigaimalai Pillaiyar; Laura Schäkel; Ghazl Al Hamwi; Miriam Diett; Robin Gedschold; Nina Geiger; Vittoria Lopez; Salahuddin Mirza; Vigneshwaran Namasivayam; Anke C Schiedel; Katharina Sylvester; Dominik Thimm; Christin Vielmuth; Lan Phuong Vu; Maria Zyulina; Jochen Bodem; Michael Gütschow; Christa E Müller
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-24       Impact factor: 16.823

8.  Comparison of anti-SARS-CoV-2 activity and intracellular metabolism of remdesivir and its parent nucleoside.

Authors:  Sijia Tao; Keivan Zandi; Leda Bassit; Yee Tsuey Ong; Kiran Verma; Peng Liu; Jessica A Downs-Bowen; Tamara McBrayer; Julia C LeCher; James J Kohler; Philip R Tedbury; Baek Kim; Franck Amblard; Stefan G Sarafianos; Raymond F Schinazi
Journal:  Curr Res Pharmacol Drug Discov       Date:  2021-08-12

Review 9.  A review of the latest research on Mpro targeting SARS-COV inhibitors.

Authors:  Huihui Yang; Jinfei Yang
Journal:  RSC Med Chem       Date:  2021-04-14

10.  Olive-Derived Triterpenes Suppress SARS COV-2 Main Protease: A Promising Scaffold for Future Therapeutics.

Authors:  Hani A Alhadrami; Ahmed M Sayed; Ahmed M Sharif; Esam I Azhar; Mostafa E Rateb
Journal:  Molecules       Date:  2021-05-01       Impact factor: 4.411

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