Literature DB >> 33509985

Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies.

Håkon Kaspersen1, Thomas H A Haverkamp2, Hanna Karin Ilag2, Øivind Øines1, Camilla Sekse1, Jannice Schau Slettemeås3.   

Abstract

In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
Copyright © 2021 Kaspersen et al.

Entities:  

Year:  2021        PMID： 33509985     DOI： 10.1128/MRA.01190-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  1 in total

1.  Longitudinal Sampling Reveals Persistence of and Genetic Diversity in Extended-Spectrum Cephalosporin-Resistant Escherichia coli From Norwegian Broiler Production.

Authors:  Solveig Sølverød Mo; Madelaine Norström; Jannice Schau Slettemeås; Anne Margrete Urdahl; Amar Anandrao Telke; Marianne Sunde
Journal:  Front Microbiol       Date:  2021-12-10       Impact factor: 5.640
  1 in total

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